Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0210 ATGGTGAAGACGGTTACTCCTGATGGGATCTCGACGATTCTAGTAAATCCGACGCCGGAATCGTTCTCCGTAGTTCCAGATATCGTGGTCCAGATCCTCGATCTGAAGCCAACCGGAAATCGCTACACATTTACTGCAAATGATGGGAGAACCAAGCTCAAAGCTATACTTCCGGCTAATCTGTCTTCTTCAGTTATATCCGGAAGTATTCAGAATTTGGGTCTTATTCAAATCCTCGATTACTCCCTCAATGACATCCCAAACAAGTCAGAAAAGTATCTTGTTGTGTCAAAATGTGAAATAGTTTCTGCTGCTCTTGAAATGGAGATAAAAAGTGACATAAAATGTGATGAGGCTGCTGACATTTTGTTTAAGAAACCAAAACTAGAACATGAGGTAAAAAGTGAAGTGAATGTGGAAGGCGGATCTGGTATTTTTTTGAAGCCAAAGCGAGAAATGGTTTCAAAATCAGCTGCTCAAATTGTTCATGAACAGCATGCTAATATGGCCCCACCTGCAAGAATGTCTATGACAAGGAGAGTTCACCCTCTTGTTTCCTTGAATCCATACCAAGGAAATTGGACTATTAAAGTTCGAGTAACAAATAAGGGCAATATGCGTATCTATAAGAATTATAGGGGAGAAGGATGTGTCTTCAATGTGGAGTTGACAGATGAGGATGGAACACAAATTCAAGCAACAATGTTCAATGAAGCTGCAAGGAAATTTTTTGACAAGTTTGAACTTGGAAAGGTCTATTACATTTCAAAGGGAACTCTAAAAGTTGCTAACAAGCAATTTAAAACAGTGCAGAATGATTATGAGATGACTCTAAATGAGAACTCTGAGGTGGAAGAGGCCTGTAATGAAGTTCCTTTTGTTCCTGACGTGAAATTCAAATTTGTGCCCATTGACATGCTAGGTCCCTATGCCAATGGGAGAGAACTTGTAGATGTAATTGGAGTTGTTCAAAATGTTTCACCTACAATGAGTATTAGGAGGAAGAGCAACAATGAAATTACATCAAAGCGGGATGTGACTATTGCTGATGAGTCGAGAAAAACAGTTGTTGTGTCTCTATGGAATGATCTTGCAACTACTTTGGGACAAGAGTTGCTTGACAAAGTTGATCAATCTCCAGCAGTTGCAATCAAGTCCCTCAAAGTAGGAGACTTTCAAGGTGTTTCTTTGTCAACAATTAGCAGGAGCACAGTTTTGGTAAATCCGGACATACCTGAAGCTAAGAAGTTGAGATCCTGGTATGATTCTGAAGGTAAAGGCACTCCAATGGCCTCTATTGGAAGTGGCTTGAACTCATCTACCAAAAGTGGAATGAGATCTGTGTATGCTGATCGGGTCCTATTGTCTCATATACTTAAGGACCCTTCACTTGGGGAAGATAAGCCTATGTTTTTCAGCATTCGAGCATATATTAGCTTGATCAAACCTGACCAAACTATGTGGTATCGTGCCTGTAAAACTTGCAATAAGAAAGTTACTGAAGCTATTGGATCTGGATATTGGTGTGAAGGCTGCCAGAATAATGTTGATGAATGCAATTTAAGATATATACTTGTTGTGAGAGTTTCTGATTCAAGTAGTGAAGCCTACGTCTCTCTCTTCAATGAAGAAGCAGAAAACGTCATTGGTTGCTCAGCTGATGAGCTTGACAAGCTCAAATCACAGGAGGGAGATAAGAACTTGTTTCAGCATAAACTGAAAGAAGCTACGTGGGTCCCTCATCTGTTTCGGGTGAGTGTTTCTCAAAACGAATACAACGGAGAGAAGAGGCAGAGGCTCACTATAAAGGCTATTGCTTCTGTTGATTTTGCTGCAGAATCAAGATTGTTGCTTGAAGATATATCTAAGATGAGAGTTTCTAAGTAG 1887 40.01 MVKTVTPDGISTILVNPTPESFSVVPDIVVQILDLKPTGNRYTFTANDGRTKLKAILPANLSSSVISGSIQNLGLIQILDYSLNDIPNKSEKYLVVSKCEIVSAALEMEIKSDIKCDEAADILFKKPKLEHEVKSEVNVEGGSGIFLKPKREMVSKSAAQIVHEQHANMAPPARMSMTRRVHPLVSLNPYQGNWTIKVRVTNKGNMRIYKNYRGEGCVFNVELTDEDGTQIQATMFNEAARKFFDKFELGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEACNEVPFVPDVKFKFVPIDMLGPYANGRELVDVIGVVQNVSPTMSIRRKSNNEITSKRDVTIADESRKTVVVSLWNDLATTLGQELLDKVDQSPAVAIKSLKVGDFQGVSLSTISRSTVLVNPDIPEAKKLRSWYDSEGKGTPMASIGSGLNSSTKSGMRSVYADRVLLSHILKDPSLGEDKPMFFSIRAYISLIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQNNVDECNLRYILVVRVSDSSSEAYVSLFNEEAENVIGCSADELDKLKSQEGDKNLFQHKLKEATWVPHLFRVSVSQNEYNGEKRQRLTIKAIASVDFAAESRLLLEDISKMRVSK 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1408756 1412305 + Conep16aG0021400.1 Cone16ag0210 454644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0210 628 Gene3D - 180 289 IPR012340 -
Cone16ag0210 628 Pfam Replication factor-A C terminal domain 471 617 IPR013955 -
Cone16ag0210 628 CDD RPA1_DBD_A 183 286 - -
Cone16ag0210 628 SUPERFAMILY Nucleic acid-binding proteins 449 624 IPR012340 -
Cone16ag0210 628 PANTHER REPLICATION FACTOR A 1, RFA1 182 605 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Cone16ag0210 628 FunFam Replication protein A subunit 4 114 - -
Cone16ag0210 628 CDD RPA1_DBD_C 459 623 IPR047192 -
Cone16ag0210 628 Pfam Replication protein A OB domain 315 408 IPR031657 -
Cone16ag0210 628 FunFam Replication protein A subunit 437 624 - -
Cone16ag0210 628 SUPERFAMILY Nucleic acid-binding proteins 299 426 IPR012340 -
Cone16ag0210 628 Gene3D - 4 112 IPR012340 -
Cone16ag0210 628 Gene3D - 294 433 IPR012340 -
Cone16ag0210 628 FunFam Replication protein A subunit 180 289 - -
Cone16ag0210 628 SUPERFAMILY Nucleic acid-binding proteins 4 108 IPR012340 -
Cone16ag0210 628 Gene3D - 435 624 IPR012340 -
Cone16ag0210 628 SUPERFAMILY Nucleic acid-binding proteins 181 288 IPR012340 -
Cone16ag0210 628 FunFam Replication protein A subunit 293 432 - -
Cone16ag0210 628 Pfam OB-fold nucleic acid binding domain 194 279 IPR004365 GO:0003676(InterPro)
Cone16ag0210 628 NCBIfam replication factor-a protein 1 (rpa1) 10 623 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone16ag0210 628 Coils Coil 542 562 - -
Cone16ag0210 628 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cone16ag0210 628 CDD RPA1_DBD_B 316 422 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0531 Cone-Chr12:3699430 Cone16ag0210 Cone-Chr16:1408756 5.71E-92 dispersed
Cone16ag0210 Cone-Chr16:1408756 Cone7ag0036 Cone-Chr7:163234 2.68E-95 dispersed
Cone16ag0210 Cone-Chr16:1408756 Cone2ag0799 Cone-Chr2:34010770 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0210 K07466 - vvi:100255412 955.281