Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0215 ATGTATGGTCAATCAAATTATCGCCCTCAATTCGCAAAGGGTCCTAGAACACCTATGCCTCCGACATATCAACAGCAGAATCAAGAGGGCCCTCCCCATCATACTCCTCATTTACAACAACCTCCTCCTATTGCCCCACCTCAAGTTGGTCATCTCCAAGGATACCACCATGGTCTTCCGGGCACACCTCCTACTCAAGTACCTCTTAATGGGTCGGCAAATATGAATCTATCTTATTCACAAACTCCACCCGGTCCTGTCCATGGGAATGCCCCATTGCCACAATTTTACTGGAATGCACAACAGCCTTTGCATCCAGGTGCCCACAATGTTCACTATATACCATCATCTTTACCTCCTCCTCCTCCACCTCCACTTGGTACTACTCAACCGGAATTACTATGGGCCCCACATCCCCCTAGAGTATTACCTCCTAATCAACCGACGCAAGGACAAATGGTTCATAGGGCTCTGCCTCATGCATGGCATCAACTTGATAGTATGTCGTCTCTTCAGCCTATACCACCCCCTCCACCTCCCCTTCCTACTCAAATGGCTTCCATGGGTCACACTCCATCACTACCTTCTTCTCCACCTTCACTTCCACCTCCACCACCACCACCACCACCACCACCACCACATCCAGCGCTCCTGCCATCATCTTCAATACTAATTCATACTGATTCCATCTTGCCACGTCATTTTCACCCTCCTTTTAGCTCTGAGAAGCCTTCTGGAAGTGAGACAGGTCCTCTAGAACCTGTTGTTGAAATTAGAGCTCCTAATCAGGTTGGAAATAAATCACTTATGTGTGATAATAATCTGAACAGGGACAGTGGTAGTAGTTTGATGATAGACCTTCTACCACTTCCAGTCAAGCCAAAAGAGGACATTGTTGAGAAAATTGAAGGTTTTTGCCGACTTATTGTAAATAGTGGCTCTATTATTGAAGAGAAGACGCTTCAAAATGAATACAATAATCCAGAGTTTGAATTTTTGTTTGGTGGTGAGCCAGGGAGTGAAGCTGAAATCGCCCATGAGTATTTCATATGGATGAAAAGGAAGTATATCTTTGCTTCTAAAAGGCATACGCAACCTAAGCTGCTATCGAACCCTTTGGAAATTGTGGACTCCTCACAGCCTAAATCGTTGATGGTTTCAACTTTATTGAGCTCACCTATGGACTCTGACATGGAGATGGAAGATGATATTACTATATCTGATAAAGATGGTGTTCACTCAATCGAACCTTTGAACCTTGAGTTTGACTTAATACAAAAGGAGCATAACGTTGAAGAAAAGTTACAAGGACCTCCAAATTTGTTGGGGTGCAGCAAAGTCAGAGTCGTCTTACATGGAAGCAGTTCTTGCTCTGAGTCCTCAAAACCGGTCGATGTAGTTGAAGAAACAGGACCAAAATGCACATTTGATGATGACCAATCTATCCGCAAAGCAGCATCTATAGTTCATACTTCAATAAGTAATCCCCCTGGAGTTAACTCTGATAAATCTTCTGGTCAAATTATCAAAAGTGGGAGCCCATTTAGGCTCGTACAGGACTATGCTTCTGATGACAATTCAGAAAATTATGATGGGCCCCACCTTAGAGATGTTAGTCCTCCAACTGTCTCACCGTCTGTTGCGGCTTCTGTTACTTCAATTCATAGAGATCCCACAAATAATATGACTACCAATATTGAATCATGGAGTCCAGGCAGGAAAGTTGAGGGGATGGGTCCATTTTCTAAAACATTTTTGCCTGATAACAGTCCTGATATTTTCCCAGATTCTGAAAAAGATATTAATCACCAAAGAAATCAAGTGTCTGATATTGGTGATCCTTCTCGTGATGTCGGCTGTGTCTATGACAAGTCTGAGAAAGAACATGTGGGGAAGGAAAAGAGGGAAATGGCCCCATTGAAAACAGACGAATTCGGGAGACTTGTTAGAGAAGGTTGTATTGACAGTGACTCTGATGATTTGCGCTATACAAGGAGGCGTAATGGAAGAGCCAGAAGGCGCAGCAGGAGTCACGGCAGGAGTCGCAGCAGAAGTCAATCTCAGACTGACAAAAGGAAAAGGCGGAGAAGTCCATGGAGGCGGAGGGAGAGACGAAGCCGATCTCGCAGTTGGTCTCCTAGGACCAGAAGCAGAAGTAGGTCTCCCCCTATAAGGCGATCCAATGAGCTAAGCAGTGAGAGTACAAGACAAATAGGAAAGAGTCTGATTCGAGAATGCTTCGATTTTCGTCGAGGTAGGTGCTATAGGGGAGGTTCATGTCGCTATAAGCACCATGAATCGGGCAAGAGTGGAGAATCAAGGCTTCAAAGAAACAAGCATCCATATAATTCTGAAATTCATCCTCCTTCAAAGAATTCTACAACTAGTAGGAAAGGGAATGAGAATTCATCTTCGGAACTATGGGATCTTCAAGAGGAAGACAAGAAGAGCCAAGAGATTCCAAAAGATGTTAACATTAATCGGAAAAATGATTTTTCTGATGAAGTGAAAAATCTGATCGATAGTGATGTTATGTACAATGCTGTGAAGGAAAATCATGTAGTTCAAGAAGAACCAGAGGTGGCTATAGCTATTACCCAAGTTCGTCCCCTTAATGAGAGTAATCAAGAGATGATTGAATCTTCCATATATGATTTATCACCTGATATTATAGCAATGAAGAATGCGGATTTTATCAATAAAGAGAACATTATTTCACAAATACCCAGCTCTTCTGCAGCTGCTAGTTACAGTAAGAAAAAGCTTCTCATACTTGATATTAATGGGCTGCTTGTAGATTCTGTCCCTTATCTTCCTGATGGGTACAAACCAGACATTACAATATCAAGGAAATCAGTATTCAAGAGGCCATTCTGTGATGATTTTATAAAGTTCTGCTTTGAAAGATTTGAGGTGGGAATATGGTCGTCAAGAATCAGGATCAATCGCATTGTACTAGGACAAGGTTTTTCACAATTGAAAATAAAAATAAGCCACTATTTTTGA 3006 42.48 MYGQSNYRPQFAKGPRTPMPPTYQQQNQEGPPHHTPHLQQPPPIAPPQVGHLQGYHHGLPGTPPTQVPLNGSANMNLSYSQTPPGPVHGNAPLPQFYWNAQQPLHPGAHNVHYIPSSLPPPPPPPLGTTQPELLWAPHPPRVLPPNQPTQGQMVHRALPHAWHQLDSMSSLQPIPPPPPPLPTQMASMGHTPSLPSSPPSLPPPPPPPPPPPPHPALLPSSSILIHTDSILPRHFHPPFSSEKPSGSETGPLEPVVEIRAPNQVGNKSLMCDNNLNRDSGSSLMIDLLPLPVKPKEDIVEKIEGFCRLIVNSGSIIEEKTLQNEYNNPEFEFLFGGEPGSEAEIAHEYFIWMKRKYIFASKRHTQPKLLSNPLEIVDSSQPKSLMVSTLLSSPMDSDMEMEDDITISDKDGVHSIEPLNLEFDLIQKEHNVEEKLQGPPNLLGCSKVRVVLHGSSSCSESSKPVDVVEETGPKCTFDDDQSIRKAASIVHTSISNPPGVNSDKSSGQIIKSGSPFRLVQDYASDDNSENYDGPHLRDVSPPTVSPSVAASVTSIHRDPTNNMTTNIESWSPGRKVEGMGPFSKTFLPDNSPDIFPDSEKDINHQRNQVSDIGDPSRDVGCVYDKSEKEHVGKEKREMAPLKTDEFGRLVREGCIDSDSDDLRYTRRRNGRARRRSRSHGRSRSRSQSQTDKRKRRRSPWRRRERRSRSRSWSPRTRSRSRSPPIRRSNELSSESTRQIGKSLIRECFDFRRGRCYRGGSCRYKHHESGKSGESRLQRNKHPYNSEIHPPSKNSTTSRKGNENSSSELWDLQEEDKKSQEIPKDVNINRKNDFSDEVKNLIDSDVMYNAVKENHVVQEEPEVAIAITQVRPLNESNQEMIESSIYDLSPDIIAMKNADFINKENIISQIPSSSAAASYSKKKLLILDINGLLVDSVPYLPDGYKPDITISRKSVFKRPFCDDFIKFCFERFEVGIWSSRIRINRIVLGQGFSQLKIKISHYF 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1460441 1474534 - Conep16aG0021900.1 Cone16ag0215 454649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0215 1001 MobiDBLite consensus disorder prediction 195 218 - -
Cone16ag0215 1001 MobiDBLite consensus disorder prediction 758 781 - -
Cone16ag0215 1001 SUPERFAMILY HAD-like 916 982 IPR036412 -
Cone16ag0215 1001 SUPERFAMILY Surp module (SWAP domain) 290 356 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Cone16ag0215 1001 MobiDBLite consensus disorder prediction 523 545 - -
Cone16ag0215 1001 ProSiteProfiles SURP motif repeat profile. 301 349 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Cone16ag0215 1001 MobiDBLite consensus disorder prediction 605 637 - -
Cone16ag0215 1001 MobiDBLite consensus disorder prediction 617 637 - -
Cone16ag0215 1001 ProSiteProfiles FCP1 homology domain profile. 916 1001 IPR004274 -
Cone16ag0215 1001 Gene3D - 886 985 IPR023214 -
Cone16ag0215 1001 MobiDBLite consensus disorder prediction 19 34 - -
Cone16ag0215 1001 MobiDBLite consensus disorder prediction 168 220 - -
Cone16ag0215 1001 MobiDBLite consensus disorder prediction 1 74 - -
Cone16ag0215 1001 MobiDBLite consensus disorder prediction 758 824 - -
Cone16ag0215 1001 ProSiteProfiles Zinc finger C3H1-type profile. 740 767 IPR000571 GO:0046872(InterPro)
Cone16ag0215 1001 MobiDBLite consensus disorder prediction 667 714 - -
Cone16ag0215 1001 Pfam NLI interacting factor-like phosphatase 921 980 IPR004274 -
Cone16ag0215 1001 Gene3D Surp module 297 357 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Cone16ag0215 1001 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 291 868 IPR052650 -
Cone16ag0215 1001 MobiDBLite consensus disorder prediction 783 806 - -
Cone16ag0215 1001 MobiDBLite consensus disorder prediction 808 824 - -
Cone16ag0215 1001 MobiDBLite consensus disorder prediction 171 185 - -
Cone16ag0215 1001 MobiDBLite consensus disorder prediction 659 736 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0215 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0363 Cone-Chr11:1786468 Cone16ag0215 Cone-Chr16:1460441 3.84E-21 dispersed
Cone16ag0215 Cone-Chr16:1460441 Cone2ag0794 Cone-Chr2:33948510 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g457 Blo04g00798 . . . . . . . . . . Cma11g00215 Car10g00275 Car11g00194 Sed12g2017 . Cpe04g01453 Bhi02g00087 Tan09g2029 Cmetu02g1493 . Hepe09g0282 . . . . . . . . . Cone2ag0794 Cone16ag0215 . . . . . . . . . Bda14g00888 . Bpe15g00571 . . . Cmo10g00311 Cmo11g00217 . . . . . . . . . . . . . . . . . . . . . Csa01g00305 Chy02g02433 Cme02g01821
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029745 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2