Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0217 ATGAATCACCATGGAAGTGATAGAGTTCCTCTCCTAGATCATGGGAGAGGGAGAAAGAAAAATGAAAACGCAGCGGATGGTCAATTGACCGACTTAGAACATGGAGATGCTGTACCGGCTGCAAATGTTGGATTTGGTAGAGTTCTTTCACTTGCAAAGCCTGATGCTGGAAAGCTGGTCATTGCTACTGTCGCTCTTTTGATTGCATCAACATCAAGTATCTTGATTCCAAAATTTGGGGGGAAAATAATTGACATTGTGTCTGGAAATATCGAGACACCAGAACAGAGAGCCCAAGCCTTAGATGAAGTCAAGAACACTATTTTGTACATCTCTTTGATTGTTGTAGCTGGTTCGATTTGCTCAGCGGTTCGTGCTTGGCTGTTCTCATCTGCTAGTGAAAGGGTTGTTGCTCGCTTAAGAAAGAACTTATTCAGTCACCTTCTTCAGCAAGAAATAGCCTTTTATGATGTTACTCGAACAGGGGAGCTCCTCAGTAGGCTATCTGAGGATACTCAGATCATTAAAAATGCTGCAACTACCAATCTTTCCGAGGCTTTAAGAAACTTTTCAACTGCATTTATTGGACTTACCTTCATGTTTGCAACTTCATGGAAGTTAACATTATTGTCATTGGCTGTGGTGCCTGTTATTTCTGTTGCTGTACGTAAATTTGGCCGATATCTTCGTGAACTTTCTCACAAGACCCAAGCTGCAGCCGCTGTTTCTGCTTCCATTGCTGAGGAATCATTTGGTGCAGTACGAACAGTCAGATCTTTTGCTCAAGAAGGTTATGAGATATCACGGTACTCCGAGAAAGTTGATGAGACCTTGAATCTTGGACTTAAACAAGCAAAAGTGGTCGGTCTTTTCTCTGGAGGCATGTTTGCAGCATCAACATTCTCCGTAATAGTTGTTGTGCTTTATGGAGCTAGCTTGACGATTAATGGTTCTATGACTGCTGGTGCTCTTACATCTTTCATTCTTTATAGCTTAACTGTTGGATCCTCTGTTTCTGGATTGTCTGGGCTATATACAGCTGCAATGAAAGCAGCTGGAGCTAGTAGGCGGGTTTTCCAGCTTCTTGACCGTGTCTCATCCATGACCAACTCTGGCAACAAGTGTCCTCTTGGTGATCAAGATGCGGAAGTTGAGTTAGATGATGTCTGGTTTGCATATCCATCCCGTCCTGATCACATGGTATTGAAGGGAATAACCTTAAAGTTGCGGCCTGGATCAAAAGTAGCCCTTGTTGGTCCTAGTGGTGGTGGAAAAACCACAATCGCAAACTTGATTGAAAGATTTTATGATCCAATCAAGGGTAATATTCTGCTCAATGGGGTTCCTTTAGTAGAGATATCACACGAACATTTACACAAAAAGATCAGTATAGTTAGCCAGGAGCCGACTCTTTTCAATTGTTCTATAGAAGAGAATATAGCATATGGGCTCAATGGCAAAGTCAACACTACTGATGTCGAAAATGCAGCAAAAATGGCGAATGCACATGAGTTCATATCGAAATTTCCAGAGAAATATCAAACACATGTAGGAGAGCGTGGAGTGAGGCTCTCAGGTGGTCAGAAACAAAGAGTAGCAATTGCAAGGGCCCTATTGATGAACCCAAAAATTCTTCTCTTGGACGAAGCAACTAGTGCCCTGGATGCTGAAAGTGAATATCTAGTCCAGGATGCCATGGATTCTCTGATGAAGGGGAGGACGGTTTTGGTCATAGCACATCGGCTATCGACTGTGAAAACTGCAGACACTGTTGCTGTTGTTTCGGATGGGCAGATTGTCGAGAGTGGGACCCATGATGAACTACTTGGAAGGGATGGTGTCTATACTGCATTAGTAAGAAGGCAACTACAAGAAAGCAAAAGGGTTGAATAA 1893 42.79 MNHHGSDRVPLLDHGRGRKKNENAADGQLTDLEHGDAVPAANVGFGRVLSLAKPDAGKLVIATVALLIASTSSILIPKFGGKIIDIVSGNIETPEQRAQALDEVKNTILYISLIVVAGSICSAVRAWLFSSASERVVARLRKNLFSHLLQQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNFSTAFIGLTFMFATSWKLTLLSLAVVPVISVAVRKFGRYLRELSHKTQAAAAVSASIAEESFGAVRTVRSFAQEGYEISRYSEKVDETLNLGLKQAKVVGLFSGGMFAASTFSVIVVVLYGASLTINGSMTAGALTSFILYSLTVGSSVSGLSGLYTAAMKAAGASRRVFQLLDRVSSMTNSGNKCPLGDQDAEVELDDVWFAYPSRPDHMVLKGITLKLRPGSKVALVGPSGGGKTTIANLIERFYDPIKGNILLNGVPLVEISHEHLHKKISIVSQEPTLFNCSIEENIAYGLNGKVNTTDVENAAKMANAHEFISKFPEKYQTHVGERGVRLSGGQKQRVAIARALLMNPKILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVKTADTVAVVSDGQIVESGTHDELLGRDGVYTALVRRQLQESKRVE 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1489691 1500195 - Conep16aG0022100.1 Cone16ag0217 454651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0217 630 Pfam ABC transporter transmembrane region 59 335 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone16ag0217 630 MobiDBLite consensus disorder prediction 1 31 - -
Cone16ag0217 630 CDD ABC_MTABC3_MDL1_MDL2 384 622 - -
Cone16ag0217 630 ProSitePatterns ABC transporters family signature. 524 538 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone16ag0217 630 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 41 623 IPR039421 GO:0005743(PANTHER)|GO:0015421(PANTHER)|GO:0090374(PANTHER)
Cone16ag0217 630 CDD ABC_6TM_AtABCB27_like 62 358 - -
Cone16ag0217 630 SMART AAA_5 411 605 IPR003593 GO:0016887(InterPro)
Cone16ag0217 630 MobiDBLite consensus disorder prediction 1 29 - -
Cone16ag0217 630 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 384 621 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone16ag0217 630 Gene3D - 382 625 IPR027417 -
Cone16ag0217 630 SUPERFAMILY ABC transporter transmembrane region 47 363 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone16ag0217 630 Pfam ABC transporter 402 552 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone16ag0217 630 FunFam ABC transporter B family member 25 382 624 - -
Cone16ag0217 630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 622 IPR027417 -
Cone16ag0217 630 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 60 350 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone16ag0217 630 FunFam ABC transporter B family member 25 111 381 - -
Cone16ag0217 630 PIRSF ABC_prm/ATPase_B 13 630 - -
Cone16ag0217 630 Gene3D ABC transporter type 1, transmembrane domain 109 381 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0217 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0117 Cone-Chr14:544691 Cone16ag0217 Cone-Chr16:1489691 6.83E-92 dispersed
Cone16ag0217 Cone-Chr16:1489691 Cone19ag0590 Cone-Chr19:5220158 7.84E-109 dispersed
Cone19ag1153 Cone-Chr19:8182508 Cone16ag0217 Cone-Chr16:1489691 8.32E-67 transposed
Cone10ag0226 Cone-Chr10:1108440 Cone16ag0217 Cone-Chr16:1489691 7.22E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g451 . . . . . . . . Cmo13g01110 Cmo18g00009 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0217 . . Lsi02g00130 Csa01g00613 Chy12g01487 Cme12g01928 . . Bda11g01766 . . . . . . . . Cma13g01065 Cma18g00008 Car13g00901 . Cpe09g01165 . Bhi08g01071 . . Lac10g0176 Hepe07g2451 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 34