Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0219 ATGTCTCAGCAAGAAATGGGGAACAGCTTGGAGCAGATTCTTCACGATGGGAAGCTCTTCAGGGAGGTTAATACCCTCATCGTTGCTCATCTTCGCGGCCATAACCTCCCTCAAGCTGCAAGTGCAGTTGCTTTGGCTACAGTGACATCATTGAATGTTGATGCCCCACCCAATAAGCTACTCGAGCTGGTTGCTAAGGGTCTTGCAGTAGAAAAGGATGAGATTTCTAGAGGGATTTCTGCATCTGCACTGTATGATTCTGGTTATCGGCCAATCACAGTCCCTCGTGCTTCTGCTGTTGACTTCAGTGCCGTGCAGGATGTAAAAGGGTCATCAAGGAGTATCGCAAAGCACGAGACACGTCATCTTTCAGAGCACAAGAATATTGTCAGATGTGCACGATTTAGTCCTGATGGGAAATTTGTCGCGACTGGAAGTGCTGACACATCAATAAAGCTCTTCGAGGTGGCAAAAGTCAAGCAAATGCTGCTTCCAGATACCAAAGATGCTCCTGTTCGTCCTGTTATAAGGACATTTTATGATCATATTCAACCAATAAATGATATTGATTTTCACCCACAAAGTGCTGTACTTATATCTGGGGCAAAAGATCACACAATAAAGTTCTTTGATTTATCCAAAACAACTGCAAAAAAGGCATTCCGAGTAATCCAGGATACTCACAATGTGCGCTCTGTATCTTTTCATCCTTCTGGGGATTATGTTCTAGCTGGAACCGATCATCCCATTGCACATTTGTACGATGTCAACACGTTTCAATGTTTTCTATCTTCAAATGTCCCAGAGATGGGTGTTAACGGAGCAATAAATCAGGTCCGATATTCAGCTACAGGTGGGATGTACATTACAGCTTCTAAAGATGGTGTGGTTCGTTTATGGGATGGAGTAAGTGCTAATTGTGTTCGATCCATAGTTGGTGGGCATGGAGCATCAGAGGTCACTAGTGCAAATTTTACGAAAGATCAACGATTTGTTCTATCTTGTGGGAAGGATTCCACTGTTAAGCTTTGGGAAGTTGGCACGGGGAGATTGGTCAGGGAATATCTTGGAGCCTCGCATACCCAGTTACGATCTCAGGCTGTTTTTAACAATACCGAAGAATTTGTACTCTCCATGGACGAGTCAAGCAATGAGATTGTTATTTGGGATGCTCATACTGCAGAAAAAGTGGCAAAGTGGCCTTCTAACCATAACGGTTCCCCACGTTGGCTCGAGCATTCACCAACAGAGGGAGCTTTTGTTTCCTGTGGGACTGACAGATCGGTTCGATTCTGGAAGGAGGTTTCATAG 1311 44.32 MSQQEMGNSLEQILHDGKLFREVNTLIVAHLRGHNLPQAASAVALATVTSLNVDAPPNKLLELVAKGLAVEKDEISRGISASALYDSGYRPITVPRASAVDFSAVQDVKGSSRSIAKHETRHLSEHKNIVRCARFSPDGKFVATGSADTSIKLFEVAKVKQMLLPDTKDAPVRPVIRTFYDHIQPINDIDFHPQSAVLISGAKDHTIKFFDLSKTTAKKAFRVIQDTHNVRSVSFHPSGDYVLAGTDHPIAHLYDVNTFQCFLSSNVPEMGVNGAINQVRYSATGGMYITASKDGVVRLWDGVSANCVRSIVGGHGASEVTSANFTKDQRFVLSCGKDSTVKLWEVGTGRLVREYLGASHTQLRSQAVFNNTEEFVLSMDESSNEIVIWDAHTAEKVAKWPSNHNGSPRWLEHSPTEGAFVSCGTDRSVRFWKEVS 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1531219 1537235 - Conep16aG0022300.1 Cone16ag0219 454653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0219 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 220 IPR001680 GO:0005515(InterPro)
Cone16ag0219 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 164 IPR001680 GO:0005515(InterPro)
Cone16ag0219 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 301 - -
Cone16ag0219 436 Gene3D - 97 269 IPR015943 GO:0005515(InterPro)
Cone16ag0219 436 SUPERFAMILY WD40 repeat-like 118 433 IPR036322 GO:0005515(InterPro)
Cone16ag0219 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 401 436 IPR001680 GO:0005515(InterPro)
Cone16ag0219 436 SMART WD40_4 217 255 IPR001680 GO:0005515(InterPro)
Cone16ag0219 436 SMART WD40_4 393 433 IPR001680 GO:0005515(InterPro)
Cone16ag0219 436 SMART WD40_4 116 155 IPR001680 GO:0005515(InterPro)
Cone16ag0219 436 SMART WD40_4 258 301 IPR001680 GO:0005515(InterPro)
Cone16ag0219 436 SMART WD40_4 172 211 IPR001680 GO:0005515(InterPro)
Cone16ag0219 436 SMART WD40_4 304 345 IPR001680 GO:0005515(InterPro)
Cone16ag0219 436 Pfam WD domain, G-beta repeat 307 344 IPR001680 GO:0005515(InterPro)
Cone16ag0219 436 Pfam WD domain, G-beta repeat 274 301 IPR001680 GO:0005515(InterPro)
Cone16ag0219 436 Pfam WD domain, G-beta repeat 120 154 IPR001680 GO:0005515(InterPro)
Cone16ag0219 436 Pfam WD domain, G-beta repeat 227 247 IPR001680 GO:0005515(InterPro)
Cone16ag0219 436 Pfam WD domain, G-beta repeat 176 211 IPR001680 GO:0005515(InterPro)
Cone16ag0219 436 Pfam WD domain, G-beta repeat 404 432 IPR001680 GO:0005515(InterPro)
Cone16ag0219 436 Gene3D - 270 435 IPR015943 GO:0005515(InterPro)
Cone16ag0219 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 123 156 - -
Cone16ag0219 436 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 9 434 IPR044633 GO:0003723(PANTHER)|GO:0005848(InterPro)|GO:0005848(PANTHER)|GO:0031124(InterPro)
Cone16ag0219 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 310 IPR001680 GO:0005515(InterPro)
Cone16ag0219 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 179 213 - -
Cone16ag0219 436 FunFam Cleavage stimulation factor subunit 50 106 436 - -
Cone16ag0219 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 354 IPR001680 GO:0005515(InterPro)
Cone16ag0219 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 401 436 - -
Cone16ag0219 436 ProSitePatterns Trp-Asp (WD) repeats signature. 332 346 IPR019775 -
Cone16ag0219 436 CDD WD40 119 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0219 K14406 - - rcu:8265064 708.368
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g447 . . . . . . . . Cmo13g01108 . . . . . . Cpe20g00085 . . . . . . . . . . . . . . . . Cone16ag0219 . . Lsi02g00134 Csa01g00616 Chy12g01484 Cme12g01925 . . Bda11g01767 . . . . . Sed08g2132 . . Cma13g01063 . Car13g00899 . . . Bhi08g01068 Tan05g2342 Cmetu12g1898 Lac10g0178 Hepe07g2449 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009578 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 32