Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0222 ATGGAGTCTTGGGGTTATGTTTCTCAAGAAAAAGGCTTTATATGTGATGAGATAAATTCACCCACTAATTCACTCATTAGAGATAAATGTTCTTTGTTGGCTTGGGAATCTACCATAAACAATGTTGAATTCCCGGAAATGATAGTAAAAGAATTACCCGATTCAATTAGTGATGTTTTGCGTAGCAAGAAGGTTGTAACAACTTATGGAATAAGTTTTGATCCAATTCTAAGCTATCATCCTGGTGAAGATGAGTCCACTTCAAAGCTCTCGTGCTCGGTAGTGGACTCATCCAACGGCCAAGATTCACTGTCGCTTATCGATCTGAAATTGGGTCAGTTTGGGGATCATCATAAGGATCCTCAAATCTTGTCTTCTGAGTCATCAACTCCGCCGAAAAAGGTTCGGTCTTTAGGGGTTTATTCCAAGATGGCCTTTTGCCAAGTTTATGGTTGTAATAAGGATCTTAGCTCCTCTAAAGACTATCACAAGCGGCATAAAGTTTGTGAGGTTCATTCTAAGACTGCCAAAGTTATGGTGAAGGGTATAGAACAGAGGTTTTGTCAGCAATGTAGCAGGTTTCATTTGCTTGCTGAATTTGATGATGGTAAACGCAGCTGCCGGAAACGGCTTGCTGGCCACAATGAACGACGTAGAAAGCCTCATGTTATCCATTCCAGAAGGACCGGGAGGTTGCTTCATTCATCTAATGGAGGCATATTTCAAGGAACTACATCATCAAAATCGTCCTTTATTTGCCAAGATTTACTCCCAAGTGCCATCTGGAACGACGACTGTTATAGGCATATAAAAGTCGAGGACAACAACAATAATTATAAGCATCTATATGAGATTCCTATAACCAATGGAACTAAACCCCTTACCTTTCCTTACAATATGGAATCTCAATTCTCCCCTTTTCATTACAACGGAGTTAGTAGTGCTTCAACCGAAAACATGTTCCATCATTTCAATGCATCCTCGAATTTTCAAGTCCTTCATGCGATTCCAGACTCTATTCGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAACTCCTCAAATCATTCCATGGCTTGTCAATATAACATGGCTCAAGTTCCGGAACAAAAGCTCATGGAGGAAGTAGTAGAAAGCTCTCAGGAGGATTTGAGTGGTGGTGGGATGTTTATTAATAATAATAGTAACAACAATAATAATCAGTTTGTCTCCACGGCTGAAGGTGGGGCCGACATCGGGAATAGTGATGATGGTGTCATCAACATTCAACAACGTGCTGATGGGATCTTGGATTTGGAAAATGATGTCAAGGATCGTGTCTCGTATGAGAATAGTCAGACCATTGACTTGCTCCAGCTTTCATCTCAGCTTCCGCGAGTGGAGCATCATAGGCAATCCGTGTTGGTTAAGGAGGAAAATCCGGCCTTTTGCTTTGTTCAGATAACTTGA 1449 41.06 MESWGYVSQEKGFICDEINSPTNSLIRDKCSLLAWESTINNVEFPEMIVKELPDSISDVLRSKKVVTTYGISFDPILSYHPGEDESTSKLSCSVVDSSNGQDSLSLIDLKLGQFGDHHKDPQILSSESSTPPKKVRSLGVYSKMAFCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVMVKGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPHVIHSRRTGRLLHSSNGGIFQGTTSSKSSFICQDLLPSAIWNDDCYRHIKVEDNNNNYKHLYEIPITNGTKPLTFPYNMESQFSPFHYNGVSSASTENMFHHFNASSNFQVLHAIPDSIRALSLLSSQSQNSSNHSMACQYNMAQVPEQKLMEEVVESSQEDLSGGGMFINNNSNNNNNQFVSTAEGGADIGNSDDGVINIQQRADGILDLENDVKDRVSYENSQTIDLLQLSSQLPRVEHHRQSVLVKEENPAFCFVQIT 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1572811 1576916 - Conep16aG0022600.1 Cone16ag0222 454656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0222 482 FunFam Squamosa promoter-binding-like protein 14 139 208 - -
Cone16ag0222 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 100 367 IPR044817 GO:0003677(InterPro)
Cone16ag0222 482 SUPERFAMILY SBT domain 145 223 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone16ag0222 482 ProSiteProfiles Zinc finger SBP-type profile. 144 221 IPR004333 GO:0003677(InterPro)
Cone16ag0222 482 Gene3D - 139 208 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone16ag0222 482 Pfam SBP domain 147 220 IPR004333 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0222 Cone-Chr16:1572811 Cone6ag0516 Cone-Chr6:2580897 1.03E-40 dispersed
Cone13ag0026 Cone-Chr13:172955 Cone16ag0222 Cone-Chr16:1572811 1.71E-78 wgd
Cone16ag0222 Cone-Chr16:1572811 Cone19ag0035 Cone-Chr19:246608 9.86E-83 wgd
Cone16ag0222 Cone-Chr16:1572811 Cone2ag0792 Cone-Chr2:33927478 1.76E-266 wgd
Cone16ag0222 Cone-Chr16:1572811 Cone9ag0529 Cone-Chr9:2537830 7.49E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44929 PF02798 GST_N 2.70E-16 CL0172 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0222 - - - 0.0