Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0224 ATGGGGAGGGGAAGAGTGCAACTGAAGAGAATTGAGAACAAGGTCAACAGGCAGGTCACTTTTTCAAAGAGGAGGTCTGGGCTTCTTAAGAAAGCCCATGAGATTTCCGTGCTGTGCGATGCCGATGTTGCTCTCATCGTCTTCTCCACTAAAGGGAAGCTCTTTGAATACGCCACTGATTCCTGCATGGAGAGAATCCTAGAACGATATGAGAGGTATTCCTATGCAGAGAGGCAGCTTGTTACAGATGATCAGCCTCAACCTAATGGAAGCTGGACCTTGGAACATGCCAAACTTAAAGCTAGGATGGAGGTCCTACAAGGAAATCGAAAGCATTTCATGGGCGAAGATCTTGATTCCCTAAGTCTCAAAGAGCTTCAGAGCTTAGAGCACCAGCTTGATTCAGCTCTCAAACACATAAGAACAAGAAAAAACCAGCTCATGCACGAATCGATTTTGGAGCTTCAGAAAAAGGATAAGGTATTGCAGGATCAAAATAACTTGCTGGCAAAGAAGATAAAAGAGAAAGAGAAAGTACTGGCCCAACAAGCACAATGTGAGCAGCAGAACAACGATCCTGAAAGGATGGTCTCACCTCCTGCTCTGTTACCACCACTGCGGCCATTGCAGCAAACTCTTGGTACTGGCGATTCAATTTATCAAGATAATGGAGGTGATAAAGTATTAGTTAGAGGAGATGAAGATACAAGTGGTCATCAAGGATCAGCAAACAAAATCCTGCCCCATTGGATGCTCCTCAACTTAAATTAA 771 44.23 MGRGRVQLKRIENKVNRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSTKGKLFEYATDSCMERILERYERYSYAERQLVTDDQPQPNGSWTLEHAKLKARMEVLQGNRKHFMGEDLDSLSLKELQSLEHQLDSALKHIRTRKNQLMHESILELQKKDKVLQDQNNLLAKKIKEKEKVLAQQAQCEQQNNDPERMVSPPALLPPLRPLQQTLGTGDSIYQDNGGDKVLVRGDEDTSGHQGSANKILPHWMLLNLN 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1634376 1640569 + Conep16aG0022800.1 Cone16ag0224 454658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0224 256 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone16ag0224 256 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone16ag0224 256 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone16ag0224 256 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone16ag0224 256 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Cone16ag0224 256 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone16ag0224 256 Gene3D - 13 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone16ag0224 256 Coils Coil 126 146 - -
Cone16ag0224 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone16ag0224 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone16ag0224 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone16ag0224 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone16ag0224 256 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone16ag0224 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone16ag0224 256 Pfam K-box region 89 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0131 Cone-Chr15:606443 Cone16ag0224 Cone-Chr16:1634376 1.13E-38 dispersed
Cone16ag0224 Cone-Chr16:1634376 Cone17ag0728 Cone-Chr17:5336181 7.27E-42 dispersed
Cone16ag0224 Cone-Chr16:1634376 Cone1ag1119 Cone-Chr1:55564708 1.92E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44930 PF04833 COBRA 3.70E-59 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0224 K09264 - gmx:100816836 323.939