Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0242 ATGGGTTTCTGGAACAAAGCTCGAAGCTTCGCCGAAGAAGCAGCGAAGCGATCACAGGAGCTGACGAAGGAGGCAGCGAAGCGATCTCAGCAGCTCACCATCGGATCCTCCAGATTCATTGACCTAGTTTCGGAGACGACGAAGAGGTCCAAAGAGTTCGCTACAGAAGCGTCGAAGCGAGCTGAACAGATCAAAATCGAAGCGGCTAAACGTGCCGATCAGATCAAGAAATTATCTGAGGGGATCTCGCCGTCAGCTGCGGTCCCGCAATCGGAATCTGGTGTGGAGATGGAGGAGGATCTGAAAAGGTTTGGAATCACCGAAGAGTTGAGGGAGTTCGTGAAAGGAATCACCATTACAACTTTCCGGGAGTTTCCACTTGAAGATGATTCGCAGATGTCTGATGTTCCTATGGTCTTAAACGTTAGGCAGGATCTTACAGAATGGCAAGAAAAGCATGCAAACCTTGTTCTTAAAGCAGTCGAGGAAATCTCAAAATTAAGGTACCAGTTGACCCCTCGTTTTATGAAAGAAAGGAAGTTCTGGAGGATATACTTTATGATAGTGAACAATCATGTCAAGCCCTATGAAAAGAGATACATGGAGCTTGTTATTCTAAAATCATTCAAACAAATTGAAGATGATAAGGTGAAGGAACCTATTAGTATCGAAATGACTTTTATGCCAGAGGTGAAGGAGGAGACAGTCCAACATAGTAAAATCTCGAATACATTATCTACTGACCAAGACTTGGATGTGTTTCTTCTTGGAGATTTTGGAGACGGCGATGAGGGCCCTGATGAAAAAGATGGAGAACTTGATAATGACTTGGACAAAATGGTGAATAGCTCGGACGATGAGAAGGAGAAATTGTAG 876 44.29 MGFWNKARSFAEEAAKRSQELTKEAAKRSQQLTIGSSRFIDLVSETTKRSKEFATEASKRAEQIKIEAAKRADQIKKLSEGISPSAAVPQSESGVEMEEDLKRFGITEELREFVKGITITTFREFPLEDDSQMSDVPMVLNVRQDLTEWQEKHANLVLKAVEEISKLRYQLTPRFMKERKFWRIYFMIVNNHVKPYEKRYMELVILKSFKQIEDDKVKEPISIEMTFMPEVKEETVQHSKISNTLSTDQDLDVFLLGDFGDGDEGPDEKDGELDNDLDKMVNSSDDEKEKL 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2642539 2650334 - Conep16aG0258900.1 Cone16ag0242 454676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0242 291 ProSiteProfiles BSD domain profile. 141 193 IPR005607 -
Cone16ag0242 291 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 283 - -
Cone16ag0242 291 Gene3D BSD domain 117 202 IPR035925 -
Cone16ag0242 291 MobiDBLite consensus disorder prediction 257 291 - -
Cone16ag0242 291 Pfam BSD domain 147 194 IPR005607 -
Cone16ag0242 291 MobiDBLite consensus disorder prediction 272 291 - -
Cone16ag0242 291 SMART wurzfinal6 141 193 IPR005607 -
Cone16ag0242 291 SUPERFAMILY BSD domain-like 105 199 IPR035925 -
Cone16ag0242 291 Coils Coil 11 31 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0242 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0890 Cone-Chr13:7876180 Cone16ag0242 Cone-Chr16:2642539 1.92E-47 dispersed
Cone16ag0242 Cone-Chr16:2642539 Cone19ag0889 Cone-Chr19:6950426 1.19E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g420 . . . Bda15g00635 Bpe12g00513 . . . . . Cma10g00279 Cma11g00230 Car10g00262 Car11g00207 Sed08g0303 . Cpe04g01528 Bhi02g00053 Tan09g2002 Cmetu02g1950 . . . . Cla06g01625 Cam06g1806 Cec06g1857 Cco06g1863 Clacu06g1766 . Cre06g2528 . Cone16ag0242 . . . . . . . . . . . . . . . Cmo10g00296 Cmo11g00233 . . . . . Cpe18g00817 . . . . . . . . . . . . . . Lsi06g01506 Csa01g00330 Chy02g02413 Cme02g01923
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008148 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 2 1 1 35