Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0254 ATGGTGTTCAAAGGAAGGTTCTTCTCCTCGAAGAAATCTAGCTCCTCTAGCCCTGATGGCTCCAACAGTCCTCGATCTCTCGGCTCGAACTCTCCTGTCAGATCGGACAAGAAGAAACCTAAATCGGCCTCCAAAGAAGAGCTGCCGCAGATCGGGAAAGCAAGCACTGCTGCCGCCGGAACGTTTAGAAGTGACGGTGGGAAGGATGGTGGGAAGAAGGAAGTTAAAGGCAAGGAGAGTACAAGTTCGGCGTCCAAGGCTAAGAAGGCGGTTAGAGATGGTAATGACTTGACCTCGTCTGTGTCGCCGATTGTTGCATCGTCACTTGGATTGAATAGGATAAAGACCAGATCAGGACCGTTGCCGCAGGAGAGTTTTTTCAGCTTCAAGGGTGATAAGGGGATGAGTAATCTTTCTAAACCGGGCAGCTTAGTTTCTGGTAGTGGAGGGAAGAAGAAGGAGGTTCTCAATCAGAGCAGAAAGGGTATTCGGGATAATGTTAGTTATTCAGATAGTATGTCGATAGGCAGTGCACAGTCGAGAGAAGAGAGTCCGAATGTGCTGGCACGGTCTCGGCTACATAACGCTGAATCTTCCTCTGAAGCAGGCCGATGTGAACCATCATGGGATTGCTCTGGAAGCTTAAGAGATTCAGATGTTTGTACACCTGAGAATACGTTTGATTTTGAAAATCCAAAAGAATCTGAATCTCCCCGTTTTAAAGCTATACTCCGTGTCACTAGTGCTCCTAGAAGGAAAAATCCTGCTGATATCAAGAGTTTTTCACATGAATTAAATTCCAAGGGTGTTCGACCATTTCCATTTTGGAAGCCTCGAGGACTAAACAACTTAGAGGAAACCTTGGTTGTTGTACGGGCAAAGTTTGACAAAGCAAAGGAGGAGGTAAATGCTGATCTGGCTGTTTTTGCAGCAGATTTGGTTGGTATTCTGGAAAAAAATGCGGATACTCATCCTGAGTGGCAGGAGACTCTTGAGGACTTGTTGGTTTTGGCTCGAAATTGTGCTATGACGACTCCTGGGGAATTTTGGCTCCAGTGTGAAGGCATTGTCCAGGAATTGGATGATAGGCGCCAAGAACTTCCTCCTGGCATGTTGAAGCAGCTTCATACCCGAATGCTTTTCATTCTCACGAGATGTACACGATTATTGCAATTCCACAAAGAATTTGATGAAGGTGAACCTATTTATCAGCTTCGTCAATCTAGAGTCCTGTACTCTGCAGATAAACGAATTCCTTCAGGACCACCAAAGGATGTCAAAAGTGCGAGTTCTTCTAAGGCCTCAAAGGCAGCTTCAGCCAGGAAATCTTATAGTCAGGAACAGCGTGCATTGAATTGGAGTAGAGAACAAGATAAACAGCCAGGGAAGCTTGTCCCACCTGCTGCTGATGACACACCGACAAATGTAGATTCTCCTGGTAGGGACAGGATGTCTTCATGGAAGAAACTGCCTTCTCCAGCACTGAAAAGCATGAAACAAGCTACTGTGACAAAGGACCAAAATAATGATAATTTCAACCCCAAAAAGGCATCGAAGAACAGGAGAGGGGCTTCTGAAGGGAGCTTGACTACTGCTAAAGCTTCAGAGCTTCCTCTTGCGAAAGATTCCAATGAACATACTTCCAAACACCAGCATAAAGTTTCTTGGGGTTACTGGGGAGATCATCCGGCTAGTTCTGATGAGAGTTCAATTATTTGTCGCATTTGTGAGGAAGAGGTTCCAACATCTCATGTGGAAGATCATTCAAGAATTTGTGCAGTAGCTGATCGATGTGATCAGAAGGGTGTAAGTGTTGATGAGCGTCTTCTAAGGATTGCTGAAACTCTTGAGAAGATGATGGAATCTGCTCCACAGAAGGATGGCCAACATGTAGGATATCCTGATGTCGCAAAAGGGTCAAATTCTAGTATGATTGAAGAGTTTGATGCTCTCTCTCCAAAACTAAGTGATTGTTCCCATAGAGGCTCTGAGGACATGCTTGATTGCTTCCCTGAGATGGATAACTCCGCCTTCATGGAGGACTTGAAGGGCTTACCTTCCATGTCCTGCAAAACTCGGTTTGGTCCAAAATCTGATCAGGGTATGACAACTTCATCTGCAGGTAGCATGACTCCTAGGTCTCCGTTATTGACTCCAAGAACCAGTCAGATTGACTTGCTCTTGTCGGGGAAGGGTGCATACTCCGAGCATGATGATCTTCCCCAGATGAATGAGCTTGCTGATATTGCAAGATGTGTGGCAAATACACCTGTGGATGACGATCGCTCGATTCCATATCTACTATCTTGTCTTGAGGACTTAAGGGCCGTCACTGACAATCGGAAATTTGATGCACTTACTGTTGAGACTTTTGGAACACGCATTGAGAAGCTAATTCGGGAGAAATATTTGCAGCTTTGTGAGCTGCTTGATGATGAAAAGATGGATATATCTAGTACTGTCATTGATGAAGACACTCCTTTGGAAGATGACGTGATTCGTAGCTTGAGAACAAGCCCCGTACATTCTTCTAAGGACCGTACTTCAATAGATGACTTTGAGATTATAAAACCAATCAGCCGTGGGGCATTTGGTCGGGTTTTCTTGGCTAAAAAGAGAACAACAGGGGACCTTTTTGCAATAAAGGTTCTGAAGAAGGCAGATATGATTCGTAAGAATGCTGTTGAGAGTATACTTGCAGAACGCGATATTCTAATTTCAGTTCGAAATCCTTTTGTGGTACGGTTCTTCTATTCTTTTACATGCCGTGAGAACCTGTATCTTGTGATGGAGTATTTAAATGGAGGCGATCTCTACTCATTGTTGAGAAATTTAGGATGTTTGGATGAAGATGTTGCTCGTGTATATATAGCAGAAGTTGTGCTTGCATTGGAATATTTGCATTCTCTCAATGTAGTTCATCGTGATTTGAAGCCTGACAATTTGTTAATTGCTCATGATGGCCATCTTAAGTTGACAGATTTTGGGCTCTCTAAAGTTGGTCTTCTTAACAGCACTGATGATTTGTCAGCACCAGCGGTCAGTGGGACCTCCCTCTTCGGGGAAGATGAGCCTCCAGTATCTATGTCTGAGCATCAGCAAGAAAGGAGGAAGAAACGTTCTGCTGTGGGCACGCCTGACTATTTGGCGCCTGAAATACTTTTGGGAACTGGTCATGGTGCCACTGCTGATTGGTGGTCTGTAGGGATCATTTTGTTTGAACTGATTGTTGGCATCCCACCTTTCAATGCTGAACATCCCCAGACGATATTTGATAATATTCTCAATCGTAAAATACCTTGGCCTCGGGCACCTGAAGAAATGAGCTTTGAAGCACAGGATTTAATTGATCGATTGTTAACTGAAGATCCTCATCAGAGACTTGGTGCTAGGGGAGCATCAGAGGTGAAGCAGCATATTTTCTTTAAAGATATCAACTGGGACACACTAGCCAGACAAAAGGCTGCATTTGTACCAACCTCAGAAAGTGCGCTAGATACGAGTTACTTTACAAGTCGCTACACATGGAATAACGATGATGTTTATCCAGCCAGCGATATTGAGGATTCGAGTGATGCTGACAGTTCAAGTGGAAGTAGTTGTTTGAGCAATCGCCAAGAAGAAGTGGGAGATGAATGTAGGGGTCTCACTGAGTTCGAGACTGGCTCATCTATCAATTACTCTTTCAGTAATTTCTCATTCAAGAATCTGTCCCAGCTTGTATCAATCAACTATGATCTGCTCTCCAAGGGTTGGAAGGATGATCAATCAAATCCTAATGCATAA 3786 44.16 MVFKGRFFSSKKSSSSSPDGSNSPRSLGSNSPVRSDKKKPKSASKEELPQIGKASTAAAGTFRSDGGKDGGKKEVKGKESTSSASKAKKAVRDGNDLTSSVSPIVASSLGLNRIKTRSGPLPQESFFSFKGDKGMSNLSKPGSLVSGSGGKKKEVLNQSRKGIRDNVSYSDSMSIGSAQSREESPNVLARSRLHNAESSSEAGRCEPSWDCSGSLRDSDVCTPENTFDFENPKESESPRFKAILRVTSAPRRKNPADIKSFSHELNSKGVRPFPFWKPRGLNNLEETLVVVRAKFDKAKEEVNADLAVFAADLVGILEKNADTHPEWQETLEDLLVLARNCAMTTPGEFWLQCEGIVQELDDRRQELPPGMLKQLHTRMLFILTRCTRLLQFHKEFDEGEPIYQLRQSRVLYSADKRIPSGPPKDVKSASSSKASKAASARKSYSQEQRALNWSREQDKQPGKLVPPAADDTPTNVDSPGRDRMSSWKKLPSPALKSMKQATVTKDQNNDNFNPKKASKNRRGASEGSLTTAKASELPLAKDSNEHTSKHQHKVSWGYWGDHPASSDESSIICRICEEEVPTSHVEDHSRICAVADRCDQKGVSVDERLLRIAETLEKMMESAPQKDGQHVGYPDVAKGSNSSMIEEFDALSPKLSDCSHRGSEDMLDCFPEMDNSAFMEDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTPRSPLLTPRTSQIDLLLSGKGAYSEHDDLPQMNELADIARCVANTPVDDDRSIPYLLSCLEDLRAVTDNRKFDALTVETFGTRIEKLIREKYLQLCELLDDEKMDISSTVIDEDTPLEDDVIRSLRTSPVHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEDVARVYIAEVVLALEYLHSLNVVHRDLKPDNLLIAHDGHLKLTDFGLSKVGLLNSTDDLSAPAVSGTSLFGEDEPPVSMSEHQQERRKKRSAVGTPDYLAPEILLGTGHGATADWWSVGIILFELIVGIPPFNAEHPQTIFDNILNRKIPWPRAPEEMSFEAQDLIDRLLTEDPHQRLGARGASEVKQHIFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYTWNNDDVYPASDIEDSSDADSSSGSSCLSNRQEEVGDECRGLTEFETGSSINYSFSNFSFKNLSQLVSINYDLLSKGWKDDQSNPNA 1261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2793920 2805430 + Conep16aG0260300.1 Cone16ag0254 454688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0254 1261 SMART pkinase_C_6 1143 1220 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0254 1261 ProSiteProfiles Protein kinase domain profile. 853 1142 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0254 1261 MobiDBLite consensus disorder prediction 161 202 - -
Cone16ag0254 1261 MobiDBLite consensus disorder prediction 1028 1042 - -
Cone16ag0254 1261 ProSitePatterns Serine/Threonine protein kinases active-site signature. 972 984 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0254 1261 FunFam probable serine/threonine protein kinase IREH1 851 940 - -
Cone16ag0254 1261 MobiDBLite consensus disorder prediction 425 451 - -
Cone16ag0254 1261 MobiDBLite consensus disorder prediction 1 216 - -
Cone16ag0254 1261 SMART serkin_6 853 1142 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0254 1261 Gene3D Transferase(Phosphotransferase) domain 1 937 1160 - -
Cone16ag0254 1261 PANTHER SERINE/THREONINE-PROTEIN KINASE 553 1236 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cone16ag0254 1261 MobiDBLite consensus disorder prediction 695 716 - -
Cone16ag0254 1261 MobiDBLite consensus disorder prediction 1185 1207 - -
Cone16ag0254 1261 MobiDBLite consensus disorder prediction 8 31 - -
Cone16ag0254 1261 MobiDBLite consensus disorder prediction 32 46 - -
Cone16ag0254 1261 Coils Coil 281 301 - -
Cone16ag0254 1261 MobiDBLite consensus disorder prediction 66 93 - -
Cone16ag0254 1261 MobiDBLite consensus disorder prediction 1014 1042 - -
Cone16ag0254 1261 SUPERFAMILY Protein kinase-like (PK-like) 850 1186 IPR011009 -
Cone16ag0254 1261 ProSiteProfiles AGC-kinase C-terminal domain profile. 1143 1244 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0254 1261 MobiDBLite consensus disorder prediction 414 551 - -
Cone16ag0254 1261 Pfam Protein kinase domain 854 1142 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0254 1261 MobiDBLite consensus disorder prediction 1189 1206 - -
Cone16ag0254 1261 CDD STKc_MAST_like 859 1147 - -
Cone16ag0254 1261 MobiDBLite consensus disorder prediction 497 514 - -
Cone16ag0254 1261 MobiDBLite consensus disorder prediction 95 123 - -
Cone16ag0254 1261 Gene3D Phosphorylase Kinase; domain 1 851 1171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0884 Cone-Chr14:6840262 Cone16ag0254 Cone-Chr16:2793920 0 dispersed
Cone15ag0867 Cone-Chr15:6619720 Cone16ag0254 Cone-Chr16:2793920 0 dispersed
Cone16ag0254 Cone-Chr16:2793920 Cone5ag1534 Cone-Chr5:10521986 2.11E-77 dispersed
Cone11ag0097 Cone-Chr11:411823 Cone16ag0254 Cone-Chr16:2793920 1.71E-49 wgd
Cone16ag0254 Cone-Chr16:2793920 Cone2ag0776 Cone-Chr2:33726449 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82196 PF02190 LON_substr_bdg 1.50E-24 CL0178 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0254 K08789 - rcu:8280394 1855.11