Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0255 ATGGCGGAACTCTTAAAGGAAAATCAAAAGCATTTCCTTACCATTTTACTTCTCCTCTTCCTCGCCATCCTCCCCATTGCAAAACCCGATCTTGCTTCCGACAAGGCGGCACTACTCTCCCTCCGCTCCGCTGTCGGCGGCCGCACTCTCCTCTGGAACGTAACAGAGCAAAGCCCCTGTTCTTGGGCCGGAGTCGTTTGCGAGTCAGGCCGGGTCACACTGCTCCGTTTACCCGGAGTTTCACTCTCCGGTCAAATACCCGCCGGAATATTCGGCAACTTGACCCGTTTGCGTACTCTCAGCCTCCGCCTCAACGCCTTGACAGGTGAGCTCCCTTCAGATTTGGCCGCATGTACTGATCTACGCAACCTTTATTTACAAGGCAATGGATTTAGTAGCGAAATCCCGTCGTTCCTATTCCAGTTCCATAATCTTGTTCGTCTTAACTTAGCCTTCAACAGTTTTTCCGGAGAAATCTCGCCGGATTTTAACAAACTGACCCGATTAGGCACTCTGTTTCTTCAGAACAATCAGCTTACTGGGCCTATACCGGGTTTAAAGCTTCCTAATCTGGTCCAACTCAATGTATCTAACAATTTACTGACTGGGTCTGTTCCATTAAGTTTGAAATCCTTTTCTTCAAGTGCTTTTGAGGGTAACTCACTCTGTGGAAGCCCTCTCGCCGCTTGCTCTGAAGATTTGACCGTTCCGGCGACTGGAGCGACCAGAACTGGTGGGCCTGGGAAGAAGAAGTTGTCCGGAGGTGCCATTGCAGGGATTGTGATTGGATCTGTTCTTGGTTTTGTTTTGATTCTCTTACTTTTATTGCTTTTTTGCCGAAAAAGGAGTTCTAAGAAAACAAGCTCTGTTAATAATAATGATGCGGTTAAGAGTCGGGAAGTTGAAATCGGAGGTTCAAAACCTTCTGAAGAGTTTGAAAATGGTGGGTTCGGTAATCGGGTTTCTGGGGAAGCTCCGGCGGCTGTTGCGGCGGCAGCGGTGGCGGAGAATGGGAAAGGGGAAGTGAATGGCGGGGCTGGGGTGAAGAAGTTGATGTTTTTTGGGAATTCTGGGAAGGTGTTTGATTTGGAGGATTTATTGAGAGCTTCAGCTGAGGTATTGGGGAAAGGGACGTTTGGGACAGCATATAAGGCGGTTTTGGAGGCAGGGATTGTGGTGGCGGTTAAGAGGTTGAAGGACGTGACATTTTCCGATAAGGAGTTTAGGGAGAAGATTGAACAGGTTGGAGTACTGGATCATAAGAATTTGGTACCTCTTAGGGCTTATTATTATAGTTCCGATGAGAAACTTCTTGTCTTTGATTACATGCCCATGGGAAGCCTGTCCGCCCTTTTGCATGGAAATAAAGGAGCTGGACGTACCCCACTGAATTGGGAAATCCGATCTGGCATTGCCCTCGGAGCGGCCCGTGGAATTGAATACCTCCATTCTCAAGGCCCAACCGTCTCCCACGGAAACATAAAATCATCCAACATCCTCCTAACAAACTCCTACGATGCTCGAGTCTCCGATTTCGGGCTGGCTCATCTCGTGGGTCCATCCTCCACGCCCAACCGAGTGGCGGGCTATCGAGCCCCAGAGGTGACCGACCCACGTAAGGTCTCCCAGAAGGCAGATGTTTATAGCTTCGGAGTATTACTCTTGGAGCTTTTGACTGGAAAAGCTCCAACTCATGCCCTTTTAAATGAAGAAGGGGTTGACTTGCCCAGATGGGCTCAATCCGTTGTTCGGGAAAAGTGGACTTCTGAGGTTTTCGATCTTGAACTCTTAAGGTATCAAAATGTTGAGGAGGAGATGGTTCAATTATTACAACTTGCCGTGGATTGTTCGGCACAATATCCCGATAAGAGGCCCAGTATGTCTGAGGTTATGAGAAGGATTGAAGAGATATCGCGATCGAGCCACCTAGAAGACCAGGACCCACTGCCGGATATCGTTGATGAGTACTCCTCTCAGTCATATGGGGTCCCCCACCTCATGTAG 2004 48.8 MAELLKENQKHFLTILLLLFLAILPIAKPDLASDKAALLSLRSAVGGRTLLWNVTEQSPCSWAGVVCESGRVTLLRLPGVSLSGQIPAGIFGNLTRLRTLSLRLNALTGELPSDLAACTDLRNLYLQGNGFSSEIPSFLFQFHNLVRLNLAFNSFSGEISPDFNKLTRLGTLFLQNNQLTGPIPGLKLPNLVQLNVSNNLLTGSVPLSLKSFSSSAFEGNSLCGSPLAACSEDLTVPATGATRTGGPGKKKLSGGAIAGIVIGSVLGFVLILLLLLLFCRKRSSKKTSSVNNNDAVKSREVEIGGSKPSEEFENGGFGNRVSGEAPAAVAAAAVAENGKGEVNGGAGVKKLMFFGNSGKVFDLEDLLRASAEVLGKGTFGTAYKAVLEAGIVVAVKRLKDVTFSDKEFREKIEQVGVLDHKNLVPLRAYYYSSDEKLLVFDYMPMGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGPTVSHGNIKSSNILLTNSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWAQSVVREKWTSEVFDLELLRYQNVEEEMVQLLQLAVDCSAQYPDKRPSMSEVMRRIEEISRSSHLEDQDPLPDIVDEYSSQSYGVPHLM 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2817920 2820786 - Conep16aG0260400.1 Cone16ag0255 454689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0255 667 ProSiteProfiles Protein kinase domain profile. 368 637 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0255 667 FunFam Probable inactive receptor kinase At1g48480 443 646 - -
Cone16ag0255 667 PANTHER OS05G0588300 PROTEIN 15 640 IPR050994 -
Cone16ag0255 667 SUPERFAMILY Protein kinase-like (PK-like) 372 646 IPR011009 -
Cone16ag0255 667 Gene3D Transferase(Phosphotransferase) domain 1 443 657 - -
Cone16ag0255 667 Pfam Leucine rich repeat N-terminal domain 32 67 IPR013210 -
Cone16ag0255 667 Gene3D Ribonuclease Inhibitor 140 231 IPR032675 -
Cone16ag0255 667 FunFam Probable inactive receptor kinase RLK902 31 187 - -
Cone16ag0255 667 Gene3D Phosphorylase Kinase; domain 1 343 442 - -
Cone16ag0255 667 Pfam Protein kinase domain 372 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0255 667 Gene3D Ribonuclease Inhibitor 33 139 IPR032675 -
Cone16ag0255 667 FunFam pollen receptor-like kinase 1 337 442 - -
Cone16ag0255 667 SUPERFAMILY L domain-like 50 212 - -
Cone16ag0255 667 CDD STKc_IRAK 374 637 - -
Cone16ag0255 667 ProSitePatterns Protein kinases ATP-binding region signature. 374 396 IPR017441 GO:0005524(InterPro)
Cone16ag0255 667 Pfam Leucine Rich Repeat 144 166 IPR001611 GO:0005515(InterPro)
Cone16ag0255 667 Pfam Leucine Rich Repeat 190 211 IPR001611 GO:0005515(InterPro)
Cone16ag0255 667 Pfam Leucine Rich Repeat 121 140 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0271 Cone-Chr11:1312509 Cone16ag0255 Cone-Chr16:2817920 2.73E-195 dispersed
Cone16ag0255 Cone-Chr16:2817920 Cone18ag1215 Cone-Chr18:8658053 2.59E-193 dispersed
Cone13ag0338 Cone-Chr13:2885015 Cone16ag0255 Cone-Chr16:2817920 2.68E-250 transposed
Cone10ag0190 Cone-Chr10:933889 Cone16ag0255 Cone-Chr16:2817920 6.10E-93 wgd
Cone16ag0255 Cone-Chr16:2817920 Cone2ag0777 Cone-Chr2:33756899 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82197 PF03662 Glyco_hydro_79n 9.00E-139 CL0058 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0255 - - - 0.0