Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0263 ATGTTGGAAGGTGGTCCGAAATTCGCTGGAATGATCGATTTAAATACTAGGCATGATTACGATTTATCACAAGGGTTTTACCGTAAACTTGGTGAGGGTACAAACATGTCCATCGAAAGCTTTGCAAGCTTGCAAACAAGCAATGATGGAGGGTCCGTTGCAATGTCGGTAGATAACAGTAGTGTGGGATCAAATGATTCTCATACTCGGATTTTGAACCACCAAGGCTTGAAACAAAGATCAAATGATAACTACACTGTCCAGCAGAGTGTGAATCATAGAGGAAGAGTCACTCATGCTTTGAGTGATGATGCACTGGCTCGAGCTTTGTTCGACACTAATACCCCCACTCGAGGGCTTGAAAACTTTGAGCAATGGACTCTCGATTTGAGAATGCTTAACATGGGGGAGGCTTTTGCTCAAGGTGCCTTTGGAAAACTTTACAGAGGTACTTACAATGGTGAGGATGTTGCTATCAAGATCTTGGAGAGGCCAGAAAATGACCTTGAAAAGGCTCAGTTGATGGAGCAACAGTTTCAGCAGGAGGTTAAGATGCTTGCTACATTGAAGCACCCAAACATAGTTCGATTTATTGGGGCATGCCATAAGCCCATGGTTTGGTGCATTGTGACTGAGTATGCAAAGGGCGGGTCTGTGAGGCAGTTCCTGGCAAAGCGACTAAATCGATCAGTACCACTCAAATTAGCTGTGAAACAAGCTTTGGATGTTGCTAGGGGGATGGAATTTGTTCATGGGTTTGGATTGATCCACCGGGACTTAAAATCCGACAACCTCTTGATATTTGCTGATAGGTCCATAAAGATTGCTGATTTTGGGGTTGCGAGGATTGAGGTGCAGACTGAAGGAATGACTCCTGAGACTGGAACATACCGGTGGATGGCTCCGGAGATGATCCAGCACAGGCCTTACACACAGAAGGTGGATGTATACAGCTTTGGGATCGTACTTTGGGAATTGATTACAGGAATGCTCCCGTTCCAGAACATGACTGCTGTTCAGGCAGCTTTTGCGGTGGTTAACAAGAATTTCCGGCCAATCATTCCGAATGACTGTTTACCTGAACTTGCTGAGATTATGACTCGGTGCTGGGATGCTAATCCGGATGTGAGGCCTACTTTTACGGAAGTTGTTAGAATGCTCGAGAATGCACAGACTGAGATCATGACAACGACCCGTAGGGCTCGTTTTAGGTGCTGCATCTCCCAGCCAATGACGATGGACTGA 1245 45.7 MLEGGPKFAGMIDLNTRHDYDLSQGFYRKLGEGTNMSIESFASLQTSNDGGSVAMSVDNSSVGSNDSHTRILNHQGLKQRSNDNYTVQQSVNHRGRVTHALSDDALARALFDTNTPTRGLENFEQWTLDLRMLNMGEAFAQGAFGKLYRGTYNGEDVAIKILERPENDLEKAQLMEQQFQQEVKMLATLKHPNIVRFIGACHKPMVWCIVTEYAKGGSVRQFLAKRLNRSVPLKLAVKQALDVARGMEFVHGFGLIHRDLKSDNLLIFADRSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKNFRPIIPNDCLPELAEIMTRCWDANPDVRPTFTEVVRMLENAQTEIMTTTRRARFRCCISQPMTMD 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2923665 2928186 + Conep16aG0261200.1 Cone16ag0263 454697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0263 414 CDD STKc_MAP3K-like 140 387 - -
Cone16ag0263 414 Gene3D Transferase(Phosphotransferase) domain 1 216 409 - -
Cone16ag0263 414 Gene3D Phosphorylase Kinase; domain 1 122 215 - -
Cone16ag0263 414 Pfam Protein tyrosine and serine/threonine kinase 134 387 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0263 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0263 414 PRINTS Tyrosine kinase catalytic domain signature 358 380 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0263 414 PRINTS Tyrosine kinase catalytic domain signature 249 267 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0263 414 PRINTS Tyrosine kinase catalytic domain signature 295 305 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0263 414 PRINTS Tyrosine kinase catalytic domain signature 211 224 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0263 414 PRINTS Tyrosine kinase catalytic domain signature 314 336 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0263 414 SMART serkin_6 133 395 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0263 414 FunFam serine/threonine-protein kinase HT1 216 409 - -
Cone16ag0263 414 ProSiteProfiles Protein kinase domain profile. 133 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0263 414 PANTHER SERINE-THREONINE PROTEIN KINASE 81 389 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone16ag0263 414 FunFam Serine/threonine-protein kinase isoform 1 123 215 - -
Cone16ag0263 414 SUPERFAMILY Protein kinase-like (PK-like) 119 387 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0263 Cone-Chr16:2923665 Cone5ag1835 Cone-Chr5:12907493 3.11E-94 dispersed
Cone2ag0637 Cone-Chr2:30699838 Cone16ag0263 Cone-Chr16:2923665 5.18E-35 dispersed
Cone7ag0282 Cone-Chr7:1181029 Cone16ag0263 Cone-Chr16:2923665 6.80E-20 dispersed
Cone8ag1535 Cone-Chr8:11531445 Cone16ag0263 Cone-Chr16:2923665 1.05E-46 dispersed
Cone16ag0263 Cone-Chr16:2923665 Cone16ag0266 Cone-Chr16:2951918 2.46E-207 proximal
Cone10ag0186 Cone-Chr10:905888 Cone16ag0263 Cone-Chr16:2923665 1.97E-47 wgd
Cone11ag0120 Cone-Chr11:540829 Cone16ag0263 Cone-Chr16:2923665 7.41E-70 wgd
Cone16ag0263 Cone-Chr16:2923665 Cone18ag1359 Cone-Chr18:9340188 1.79E-66 wgd
Cone16ag0263 Cone-Chr16:2923665 Cone2ag0700 Cone-Chr2:32593335 9.14E-299 wgd
Cone16ag0263 Cone-Chr16:2923665 Cone2ag0636 Cone-Chr2:30695726 3.69E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82199 PF03662 Glyco_hydro_79n 4.60E-160 CL0058 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0263 - - - 0.0