Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0268 ATGCTATCCAATAACTACTCTCCCTCCACCTCCCATCCGACCTCTTCCGAGCCCTTTTCTTGCTCGGAAAATGGAAACAACAAGAGAAGACGAAGGCCCGCCGGAACTCCTGATCCGGATGCGGAGGTGGTGTCTCTCTCGCCAAAAACGTTACTAGAATCGGACCGTTATGTCTGCGAGATCTGCAAGCAGGGATTTCAGAGAGATCAGAATCTGCAGATGCATCGGCGAAGGCACAAAGTGCCGTGGAAGTTGCTGAAGAGAGAGAGCACATCGGTGAAGAAGCGAGTGTTCGTATGCCCCGAACCGAGCTGCCTTCACCACGACCCGTGCCACGCACTCGGCGATCTCGTGGGGATCAAGAAGCACTTCAGGAGGAAACACAGCGACCGTAAGCAGTGGGTTTGTGAGAAATGCTCAAAGGGTTATGCAGTTCAATCCGACTACAAAGCACATCTCAAGACCTGTGGGACTAGAGGCCACTCTTGCGACTGCGGCCGTGTTTTCTCCAGGGTGGAGAGCTTTATAGAACATCAAGATGCTTGCAATGTTAATAATAATGGAGCGCGTCTCAATCCAGAACCACAAATAGTGCAGTCTGCTACTTCCACTCCATGTTTGTCCCGAACAGCGTCCAGTCCGACCCCGTCCACAGACACCAACCTCAGCGCAGCGGCTCCTATCTGGCCCCCTTCTTTGGCACCAACTCCTTATCCGACTAAGTCCGCTCATACCATCACAGCCCTCTTTCCGCATAACTTGGATCTTCAACTCTCTACTACATCATCATCAAATACAAATCCCATCACTTATGAACCATTCTCGGTTTCTCCGAAAACAGATGAAACCCAGCATTCCACCCATTTACAGCTTTCAATTGGCTCGTCATCATGCGATCAGAGCGATAGCGATATCGAGCGATCTGGGTTGTTGGTCGCTTCGAAGATTAAAGAACGAGCACGCGAGCAACTAAGGTTTGCCCTAGCAGAAAAGGCAAGTGCTGAAGAGGCAAGACAGGAGGCAAAGAGGCAGATTGAACTAGCCGAGAAGGAGTTTTCGAATGCTAAGCGAATGAGACGGCAAGCGCAAGCCGAATTAGATAAAGCTCAGGCTTTGAAAGATCATGCTATTAGACAAATCAACTCCACTATCTTACAGATTACTTGCAGAGCTTGCCAACAACAATTTCAAATCAGAAAAGTAATCGATCAACAAACAGATGATCATGAAAAAGATAAAGGAGTACTACTTACTCGAACCGAATCTCAGCTAGATACATCAGCTAAAGAGTGA 1293 48.57 MLSNNYSPSTSHPTSSEPFSCSENGNNKRRRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICKQGFQRDQNLQMHRRRHKVPWKLLKRESTSVKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSDRKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNVNNNGARLNPEPQIVQSATSTPCLSRTASSPTPSTDTNLSAAAPIWPPSLAPTPYPTKSAHTITALFPHNLDLQLSTTSSSNTNPITYEPFSVSPKTDETQHSTHLQLSIGSSSCDQSDSDIERSGLLVASKIKERAREQLRFALAEKASAEEARQEAKRQIELAEKEFSNAKRMRRQAQAELDKAQALKDHAIRQINSTILQITCRACQQQFQIRKVIDQQTDDHEKDKGVLLTRTESQLDTSAKE 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2992420 2994479 + Conep16aG0261700.1 Cone16ag0268 454702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0268 430 FunFam protein indeterminate-domain 12-like 36 104 - -
Cone16ag0268 430 MobiDBLite consensus disorder prediction 409 430 - -
Cone16ag0268 430 SMART c2h2final6 57 79 IPR013087 -
Cone16ag0268 430 SMART c2h2final6 98 128 IPR013087 -
Cone16ag0268 430 SMART c2h2final6 134 161 IPR013087 -
Cone16ag0268 430 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 94 128 - -
Cone16ag0268 430 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 133 157 - -
Cone16ag0268 430 MobiDBLite consensus disorder prediction 1 44 - -
Cone16ag0268 430 Coils Coil 317 379 - -
Cone16ag0268 430 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Cone16ag0268 430 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 389 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone16ag0268 430 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cone16ag0268 430 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 161 184 - -
Cone16ag0268 430 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cone16ag0268 430 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Cone16ag0268 430 Gene3D Classic Zinc Finger 35 100 - -
Cone16ag0268 430 Gene3D Classic Zinc Finger 119 195 - -
Cone16ag0268 430 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0268 Cone-Chr16:2992420 Cone6ag1610 Cone-Chr6:12459846 1.78E-72 dispersed
Cone13ag0343 Cone-Chr13:2989059 Cone16ag0268 Cone-Chr16:2992420 1.16E-132 transposed
Cone19ag0310 Cone-Chr19:2386394 Cone16ag0268 Cone-Chr16:2992420 1.62E-126 transposed
Cone16ag0268 Cone-Chr16:2992420 Cone2ag0699 Cone-Chr2:32559838 3.76E-238 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44934 PF04004 Leo1 1.50E-46 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0268 K25871 - rcu:8261817 519.62