Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0272 ATGGAGGCGCTGCAAGTTGGATCGGAGAGAGACAATCCCACTCATCCCTCCTCATCTTCTCCCGTCTCACTTGTCTGCAGTTACTGGAAAGCTTTTGATTTGGAGAAAGAAAAATGCGTTTTGGATGAGCAAGGACTTCGGATAGCTGAAAATCAGGAAAATAGCCAGAAAAATCGACGAAAGCTTGCCGAAAGTACCAGAAATTTCAAGAAAGCTTCACCAGAGGAAAAGCTAAATTTGTTTAATTCTCTACTTAAGGGTTATCAAGAAGAAGTTGATAACCTTACCAAGAGGGCTAAATTTGGAGAAAATGCTTTCCTCAACATCTATCAAAAACTTTACGAGGCTCCAGACCCATATCCTGCTTTGGCTTCAATTGCTGAGCAAGATCTGAAATTGTCAGAACTAGAATCTGAAAACAGGAAAATGAAACTTGAGCTGGAGGAGTTCAGAACTGAAGCAGCTCATCTAAAGAACCAGCAAGCAACAATAAGAAGACTTGAAGAGCGCAATCGCCAATTAGAGCAACAGATGGAGGAAAAAGTAAAAGAAATTGTAGAGATCAAGCAACGCAGTTTGGCTGAAGAGAACCAGAAAACCCTAGAGGTCTTGAGAGAAAGGGAGCAATTGTTGCAAGACCAGTTAAGACATGCAAAAGATAGTGTTTCCAACATGCAAAAGTTACATGAGCTAGCTCAAAGTCAGTTGTTTGAGTTTCGTGCTCAATCAGAGGAAGACAGGGCAGCGAAACAGTCAGAGGTTAATCTTCTGATGGATGAAGTAGAGCGGGCTCAAACACGTCTTCTTAGCCTTGAAAGAGAGAAGGGACTTCTGCGCTCTCAGTTACAAACAGCCAATGAGGACTCTGAAAACAAGAAAAGTGTTGATCTAGATTCAAATAGTTTTCTTGAGAATTCTCTAAGTGCCAAAGAAAAGATTATCTCAGAACTGAACATGGAGCTTCATAACATCGAAATGACATTATCAAGCGAACGAGAAGAACATGTAAATGAGATCAAGAAATTAAATATATTAATAAATGAAAAGGAAGCTGCTCTTGAGGATATGAAGAAAGAGCTACAAGCAAGGCCAACAGAAAAACTAGTTGATGATCTAAGAAAAAAAGTTAAAATTTTGCAGGCGGTCGGTTACAATTCAATTGAGGCTGAAGATTGGGAAGTAGCTACGAGTGTGGAAGAGATGAGCAAAATGGAGTCCCTTCTTCTCGATAAGAACCGAAAAATGGAACATGAGCTCACACAGTTGAAGGTCAAACTTTCTGAAAAGGAATCTTTCCTAGAAACAGCTGAAATCAAGATAGTTGAACTTCAAGAAAAAATCAATGAACAACAGAGGCTAATACAAAAGTTGGAAGATGACATATTGAAGGGTTATAGCTCCAAAGATCAAAAAGATACTTTATTTGATGACTGGGATCTTTCCGAGTCTAGGGGTACTGAACTTTCTGAGAATGCAGATCAAAAGGCTACATCCATCGATCAAGATCAGAGTTCAATGCTTAAGGTGATCTGTAATCAGAGGGATCGATTTAGGACACGCTTGCGAGAGACAGAAGAGGAAATAAGGCAGTTAAAGGAGAAGATAGGGCTGCTAACGGTGGAGCTGGAAAAGACTAAAGCTGATAATGTTAAACTTTATGGGAAGATTCGTTATGTTCAAGATTACAATAATGAAAAAGTAGTTTCCAGAGGATCGAAAAAGCATGCAGAGGACCTTGAAAGTGGTTTCACATCCGATGTTGAATCCAAGTATAAGAAAATATATGAGGATGATATCAATCCTTTTGCTGCTTTCTCAAGAAAGGAAAGAGATCAAAGGTACAAAGAATTGGGTTTCAGAGATAGAATCACACTCAGCAGTGGACGATTTCTTCTGGGTAACAAGTATGCTCGAACTTTTGCATTTTTCTACACCATCGGTCTTCACGTCTTGGTATTCACCTGCCTGTATCGAATGTCAGCTCTAAGCTACCTCAGAAATGGCCCCGAGGAATTCGTGGTCGGAGATAAAATCATGAACCTCCCCCGAGCACTTTAA 2058 39.94 MEALQVGSERDNPTHPSSSSPVSLVCSYWKAFDLEKEKCVLDEQGLRIAENQENSQKNRRKLAESTRNFKKASPEEKLNLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKLELEEFRTEAAHLKNQQATIRRLEERNRQLEQQMEEKVKEIVEIKQRSLAEENQKTLEVLREREQLLQDQLRHAKDSVSNMQKLHELAQSQLFEFRAQSEEDRAAKQSEVNLLMDEVERAQTRLLSLEREKGLLRSQLQTANEDSENKKSVDLDSNSFLENSLSAKEKIISELNMELHNIEMTLSSEREEHVNEIKKLNILINEKEAALEDMKKELQARPTEKLVDDLRKKVKILQAVGYNSIEAEDWEVATSVEEMSKMESLLLDKNRKMEHELTQLKVKLSEKESFLETAEIKIVELQEKINEQQRLIQKLEDDILKGYSSKDQKDTLFDDWDLSESRGTELSENADQKATSIDQDQSSMLKVICNQRDRFRTRLRETEEEIRQLKEKIGLLTVELEKTKADNVKLYGKIRYVQDYNNEKVVSRGSKKHAEDLESGFTSDVESKYKKIYEDDINPFAAFSRKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHVLVFTCLYRMSALSYLRNGPEEFVVGDKIMNLPRAL 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3050248 3085503 - Conep16aG0262100.1 Cone16ag0272 454706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0272 685 Coils Coil 194 221 - -
Cone16ag0272 685 Coils Coil 247 288 - -
Cone16ag0272 685 Coils Coil 507 548 - -
Cone16ag0272 685 Coils Coil 126 191 - -
Cone16ag0272 685 Coils Coil 426 460 - -
Cone16ag0272 685 MobiDBLite consensus disorder prediction 1 22 - -
Cone16ag0272 685 PANTHER CCAAT DISPLACEMENT PROTEIN-RELATED 19 664 - -
Cone16ag0272 685 Coils Coil 314 362 - -
Cone16ag0272 685 Pfam CASP C terminal 436 662 IPR012955 GO:0000139(InterPro)|GO:0006891(InterPro)
Cone16ag0272 685 Coils Coil 78 105 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0272 K09313 - - vvi:100259260 1082.4
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g346 . . Bda06g00485 . . . . Bma12g00932 . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0272 . . . . . . . . . . Bpe07g00725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011821 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29