Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0273 ATGGCGGAAGGACTCGTACTACGGGGTACCATGAGAGCTCACACCGACATGGTGACGGCGATCGCCACTCCAATCGACAACCCTGACATGATCGTCACATCATCACGTGACAAATCAATCATTCTATGGCACCTTACCAGAGACGAGAAGGCTTACGGTGTTCCCCGACGCAGGCTAACCGGCCACTCTCACTTCGTTCAGGATGTCGTCCTCTCATCAGACGGTCAGTTTGCTCTCTCCGGTTCCTGGGACGGCGAGCTCCGTCTTTGGGACTTATCCACAGGTGTTTCCGCTCGGAGATTTGTCGGTCACACGAAAGATGTTCTCTCCGTCGCTTTCTCGATCGACAACCGTCAAATTGTCTCTGCCTCTCGTGACCGTACGATCAAGCTTTGGAACACTTTGGGTGAGTGCAAGTATACGATCCAGGACGGTGATTCTCATTCTGATTGGGTCAGCTGTGTCAGATTCAGCCCTAGCACAGTCCAGCCCTTAATTGTATCAGCGTCGTGGGATAAGACTGTGAAAGTTTGGAACTTGACGAATTGTAAGCTGAGAAACACTCTGAGTGGTCATCGTGGATATGTGAACACGGTGGCTGTTTCTCCAGATGGTTCGTTGTGTGCAAGTGGAGGAAAAGATGGAGATATTTTGCTCTGGGATTTGGCCGAGGGGAAGAAATTGTACTCTTTGGATGCAGGCTCAATCATCCATTCGCTCTGCTTCAGCCCCAACAGGTACTGGCTTTGCGCTGCGACTGAGCAGAGTATCAAGATCTGGGACTTGGAAAGCAAAAGCATTGTTGAGGATTTGAGGGTCGATCTCAAAGCTGAGGCTGAGAAGACTGACGACACCCATGCTGCTACTGCTAACAAGAAGAAGGTTATCTACTGCACAAGCTTGAGCTGGAGTGCTGATGGGAGCACATTGTTTAGCGGTTATACGGATGGAGTTATTAGAGTTTGGGGTATTGGACGCGGTTAA 984 50.2 MAEGLVLRGTMRAHTDMVTAIATPIDNPDMIVTSSRDKSIILWHLTRDEKAYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLSTGVSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDSHSDWVSCVRFSPSTVQPLIVSASWDKTVKVWNLTNCKLRNTLSGHRGYVNTVAVSPDGSLCASGGKDGDILLWDLAEGKKLYSLDAGSIIHSLCFSPNRYWLCAATEQSIKIWDLESKSIVEDLRVDLKAEAEKTDDTHAATANKKKVIYCTSLSWSADGSTLFSGYTDGVIRVWGIGRG 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3106442 3109373 + Conep16aG0262200.1 Cone16ag0273 454707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0273 327 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Cone16ag0273 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515(InterPro)
Cone16ag0273 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 188 IPR001680 GO:0005515(InterPro)
Cone16ag0273 327 SMART WD40_4 4 44 IPR001680 GO:0005515(InterPro)
Cone16ag0273 327 SMART WD40_4 289 323 IPR001680 GO:0005515(InterPro)
Cone16ag0273 327 SMART WD40_4 94 133 IPR001680 GO:0005515(InterPro)
Cone16ag0273 327 SMART WD40_4 182 221 IPR001680 GO:0005515(InterPro)
Cone16ag0273 327 SMART WD40_4 52 91 IPR001680 GO:0005515(InterPro)
Cone16ag0273 327 SMART WD40_4 224 261 IPR001680 GO:0005515(InterPro)
Cone16ag0273 327 SMART WD40_4 135 179 IPR001680 GO:0005515(InterPro)
Cone16ag0273 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 327 IPR001680 GO:0005515(InterPro)
Cone16ag0273 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 226 - -
Cone16ag0273 327 ProSitePatterns Trp-Asp (WD) repeats signature. 166 180 IPR019775 -
Cone16ag0273 327 FunFam Receptor for activated C kinase 1 8 327 - -
Cone16ag0273 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Cone16ag0273 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 133 IPR001680 GO:0005515(InterPro)
Cone16ag0273 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 182 - -
Cone16ag0273 327 CDD WD40 7 322 - -
Cone16ag0273 327 SUPERFAMILY WD40 repeat-like 7 325 IPR036322 GO:0005515(InterPro)
Cone16ag0273 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 95 - -
Cone16ag0273 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 327 - -
Cone16ag0273 327 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Cone16ag0273 327 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Cone16ag0273 327 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Cone16ag0273 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515(InterPro)
Cone16ag0273 327 Gene3D - 4 326 IPR015943 GO:0005515(InterPro)
Cone16ag0273 327 Pfam WD domain, G-beta repeat 54 91 IPR001680 GO:0005515(InterPro)
Cone16ag0273 327 Pfam WD domain, G-beta repeat 137 179 IPR001680 GO:0005515(InterPro)
Cone16ag0273 327 Pfam WD domain, G-beta repeat 8 43 IPR001680 GO:0005515(InterPro)
Cone16ag0273 327 Pfam WD domain, G-beta repeat 184 221 IPR001680 GO:0005515(InterPro)
Cone16ag0273 327 Pfam WD domain, G-beta repeat 226 261 IPR001680 GO:0005515(InterPro)
Cone16ag0273 327 Pfam WD domain, G-beta repeat 298 322 IPR001680 GO:0005515(InterPro)
Cone16ag0273 327 Pfam WD domain, G-beta repeat 98 133 IPR001680 GO:0005515(InterPro)
Cone16ag0273 327 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 2 324 IPR045223 GO:0001934(PANTHER)|GO:0005080(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0043022(InterPro)|GO:0043022(PANTHER)|GO:0045182(InterPro)|GO:0072344(PANTHER)
Cone16ag0273 327 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Cone16ag0273 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0273 K14753 - - csv:101216713 616.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0273 Cone-Chr16:3106442 Cone2ag0751 Cone-Chr2:33308827 2.36E-193 dispersed
Cone16ag0273 Cone-Chr16:3106442 Cone2ag0750 Cone-Chr2:33305481 1.94E-192 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g313 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0635 Cone16ag0273 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005819 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 0 39