Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0299 ATGGAATGGGACAGCAACTCAGATCTTAGCGGAGATGAGGAGGAGGAGGAGGGTTTCATGCTAAACGACGGCGGACCTCTTCCTTTTCCGGTGGAGAATTTGCTCCAAACAGCGCCTTGTGGATTCGTAGTGACCGATGCGTTAGAGCCGGATAATCCAATCATTTACGTGAACACTGTTTTTGAGGTGGTGACAGGGTATCGAGCTGAAGAGGTGCTTGGTCGCAATTGCCGTTTCTTGCAATGTAGAGGTCCATTTGCTAAAAGACGGCATCCATTGGTGAACTCCTCCGTAGTTACAGAGATCAGGAGGTGTCTTGAAGATGGCAAAGAATTTCAGGGCGAGTTGTTGAACTTCAGGAAAGATGGATCCCCTCTGATGAATAGATTGAGGTTGACACCTATCTATGGAGATGAAGAAACCATAACTCATGTTATTGGGATCCAGTTCTTCATTGAAGCAGATATCGATCTTGGGCCCGTACCAGGTACTACTACAATCAAAGATTTATCAAAATCTTTTGACAGGTCTCAATCTTGCCTTTCCTCTCTCCGTCCTGTCCCTATCGGGGAGCGGAATATCTGCCGTGGTGTTTGTGGATTATTGCAGTTAAGTGATGAGGTACTCTCTCTTAAGATTCTTTCACGGTTAACACCTAGAGATATAGCATCAGTTGGATCTGTCTGTAGGCAACTCTATGAGATCACAAAAAACGAGGATCTATGGAGAATGGTATGCCAAAATGCATGGGGTAGTGAAACGACCAGGGTTTTGGAAACTGTGCCTGGAGCAAAGAGGCTCGGGTGGGGTAGGCTCGCTCGGGAATTGACCACCCTTGAAGCGGCGGCTTGGAGGAAATTGACAGTTGGAGGTTCTGTCGAACCGTCTAGGTGCAACTTTAGCGCATGTGCGGTTGGGAATCGGGTTGTTCTTTTCGGAGGAGAAGGGGTTGATATGCAGCCAATGAATGATACTTTTGTGTTGGATTTGAATTCTAATAACCCGGAATGGCAACATGTCCAAGTAAGCTCTCCTCCTCCAGGTCGGTGGGGCCATACCCTTTCGTGCATCAACGGGTCCCACTTGGTGGTTTTTGGAGGGTGTGGAAGGCAAGGGCTGCTCAATGATGTTTTCCTTTTGGATTTGGATGGGAAGCCTCCGACATGGCGGGAGATCTCGGGTTTAGCTCCTCCGTTGCCAAGATCATGGCATAGTTCCTGCACCCTTGATGGGACCAAGTTGATAGTTTCGGGCGGTTGTGCGGATTCTGGAGTGCTCCTTAGCGACACGTTCCTTCTCGATCTGTCAATGGAGAAACCCATCTGGAGAGAGATTCCTGTCTCGTGGACCCCGCCCTCACGGTTGGGCCACACCCTATCAGTTTATGGGGGAAGGAAGATTCTAATGTTTGGGGGTTTGGCAAAAAGCGGGCCCCTTAGGTTCCGATCCAGCGATGTGTTCACAATGGATCTAAGCGAAGACGAGCCATGTTGGAGATGTGTGACCGGTAGTGGAATGCCTGGGGCTGGGAACCCGGGAGGAGTGGCCCCACCTCCTAGGCTCGACCATGTGGCCATGAGCCTCCCGGGCGGGAGAATCCTAATATTTGGTGGGTCTGTGGCAGGTCTTCACTCCGCATCACAGCTATATCTCTTGGACCCGACCGATGAGAAACCTACTTGGAGAGTATTGAAAGTACCTGGGCGACCCCCTCGATTTGCTTGGGGACATAGTACTTGTGTTGTTGGAGGGACTCGGGCCATAGTTCTTGGGGGTCAAACTGGAGAAGAATGGATGCTAAGTGAACTTCATGAGCTATCTTTGGTGAGTAATTTCATCTAA 1842 49.73 MEWDSNSDLSGDEEEEEGFMLNDGGPLPFPVENLLQTAPCGFVVTDALEPDNPIIYVNTVFEVVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVNSSVVTEIRRCLEDGKEFQGELLNFRKDGSPLMNRLRLTPIYGDEETITHVIGIQFFIEADIDLGPVPGTTTIKDLSKSFDRSQSCLSSLRPVPIGERNICRGVCGLLQLSDEVLSLKILSRLTPRDIASVGSVCRQLYEITKNEDLWRMVCQNAWGSETTRVLETVPGAKRLGWGRLARELTTLEAAAWRKLTVGGSVEPSRCNFSACAVGNRVVLFGGEGVDMQPMNDTFVLDLNSNNPEWQHVQVSSPPPGRWGHTLSCINGSHLVVFGGCGRQGLLNDVFLLDLDGKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPIWREIPVSWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEDEPCWRCVTGSGMPGAGNPGGVAPPPRLDHVAMSLPGGRILIFGGSVAGLHSASQLYLLDPTDEKPTWRVLKVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLVSNFI 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3419655 3424852 + Conep16aG0264800.1 Cone16ag0299 454733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0299 613 SUPERFAMILY F-box domain 193 262 IPR036047 GO:0005515(InterPro)
Cone16ag0299 613 FunFam Putative LOV domain-containing protein 479 612 - -
Cone16ag0299 613 FunFam Adagio protein 1 198 245 - -
Cone16ag0299 613 Pfam PAS domain 40 149 IPR000014 -
Cone16ag0299 613 FunFam Putative LOV domain-containing protein 274 478 - -
Cone16ag0299 613 Pfam F-box-like 209 247 IPR001810 GO:0005515(InterPro)
Cone16ag0299 613 FunFam Adagio protein 1 29 160 - -
Cone16ag0299 613 NCBIfam PAS domain S-box protein 34 147 IPR000014 -
Cone16ag0299 613 SUPERFAMILY PYP-like sensor domain (PAS domain) 38 149 IPR035965 -
Cone16ag0299 613 Gene3D - 477 611 IPR015915 GO:0005515(InterPro)
Cone16ag0299 613 Gene3D - 198 245 - -
Cone16ag0299 613 MobiDBLite consensus disorder prediction 1 20 - -
Cone16ag0299 613 Gene3D PAS domain 24 160 - -
Cone16ag0299 613 Pfam Kelch motif 521 568 IPR011498 GO:0005515(InterPro)
Cone16ag0299 613 Pfam Kelch motif 454 504 IPR011498 GO:0005515(InterPro)
Cone16ag0299 613 SUPERFAMILY Galactose oxidase, central domain 284 598 IPR011043 -
Cone16ag0299 613 CDD PAS 38 148 IPR000014 -
Cone16ag0299 613 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 37 610 - GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007623(PANTHER)|GO:0009637(PANTHER)|GO:0019005(PANTHER)
Cone16ag0299 613 CDD F-box_AtADO-like 200 246 - -
Cone16ag0299 613 ProSiteProfiles PAS repeat profile. 31 109 IPR000014 -
Cone16ag0299 613 Gene3D - 274 476 IPR015915 GO:0005515(InterPro)
Cone16ag0299 613 Pfam Galactose oxidase, central domain 348 400 - -
Cone16ag0299 613 Pfam Galactose oxidase, central domain 297 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0299 K12115 - - csv:101222265 1125.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0299 Cone-Chr16:3419655 Cone9ag0388 Cone-Chr9:1773687 3.05E-298 dispersed
Cone16ag0299 Cone-Chr16:3419655 Cone2ag0725 Cone-Chr2:32905264 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g208 . . . . . . . . Cmo05g00672 . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0299 . . . . . . . . . . . . . . . . . . . . Car05g00635 Cpe11g00567 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002995 2 1 2 3 2 2 4 1 2 1 2 1 2 0 1 2 2 2 2 2 1 1 1 1 2 2 1 2 1 2 50