Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone16ag0301 | ATGGCAGCTATCATGTCCATTGCTCTAGCAAATGGAGAAGGGCAGCCCCCTGATTGGCAGGATTTTCTGGGTATTACCTGTTTGTTAGTGATCAACTCCACCATTAGTTTTATTGAAGAGAACAATGCTGGAAATGCTGCTGCTGCCCTCATGGCCGGTCTTGCTCCCAAGGCTAAGGTGCTTAGGGATGGAAAGTGGTCTGAAGAGGATGCTGCGATTCTCGTTCCGGGAGACATCATTAGCATCAAGCTGGGAGATATTATCCCAGCAGATGCTCGTCTTCTAGAAGGTGATCCTTTAAAGATTGATCAATCCGCTCTCACTGGAGAATCACTTCCCGTAACTAAGAATCCCGGAGAAGAAATCTTCTCCGGTTCGACATGTAAACAAGGAGAGATAGAAGCTGTTGTCATCGCCACTGGTGTTCATACCTTTTTTGGAAAGGCAGCGCATCTTGTGGATAGCACCAACCAAGTCGGACATTTCCAGAGGGTTCTAGCAGCCATTGGGAACTTTTGTATCGTCTCTATCGCCTTTGGATTGGTAATTGAGATTATAGTGATGTACCCGATTCAGAAACGCAAGTACAGGGACGGTATCAATAATCTTCTCGTTCTTTTGATCGGAGGAATCCCGATTGCTATGCCAACTGTCTTGTCTGTGACAATGGCTATTGGGTCCCACAAGCTGTCCATACAAGGTGCCATCACTAAGCGTATGACTGCCATTGAGGAACTGGCCGGTATGGATGTCCTATGCAGTGACAAAACTGGGACACTAACACTTAACAAGCTTACTATTGACAAAAATCTAACCGAGGTGTTTATAAAGGGCGTGGACAAAGATGATGTCATCTTATATGCCGCAAGGGCTTCTAGAACCGAGAACCAGGACGCCATTGATGCTGCCATTGTAGGAACCCTAGCAGACCCAAAGGAGGCCCGGGCCGGTATAACTGAAGTGCATTTTTTCCCATTCAATCCTGTGGATAAGAGAACTGCATTAACTTACGTTGATGCGGAAGGAAAATGGCATAGAGCAAGCAAAGGTGCTCCTGAGCAGATCTTGACTCTTTGCAATTGCAAGGAAGACATGAAAAGGAAGGTTCACAGCACCATAGACAAGTTTGCCGAACGTGGGCTCCGGTCATTAGCTGTTTCCAGACAGGAAGTGCCCGAGAGAAGCAAGGAAAGCCCCGGTGCTCCTTGGCAGTTTGTTGGTTTGTTGTCCCTTTTTGATCCTCCAAGACACGACAGTGCAGAAACCATTCGTAGGGCCCTCGAGCTTGGAGTGAATGTTAAGATGATTACTGGTGACCAACTTGCCATTGCAAAGGAGACTGGTCGAAGGCTTGGTATGGGGTCAAATATGTATCCATCTGCTTCATTGCTAGGCCAACACCAGGATGAAAGCATTATCGGAATTCCCATAGAAGAGTTGATCGAAAAGGCTGATGGGTTTGCCGGAGTATTTCCAGAGCACAAATATGAGATCGTGAAGAAGCTACAAGAGAGGAAACACATATGTGGAATGACTGGAGATGGAGTGAATGATGCCCCCGCTTTGAAGAAGGCAGATATCGGAATTGCCGTGGCTGATGCTACTGATGCTGCAAGAGGTGCTTCTGATATAGTCCTCACTGAACCCGGTCTAAGTGTTATCATCAGTGCAGTGCTCACAAGTAGAGCCATCTTTCAGAGAATGAAGAACTACACAATTTATGCAGTTTCAATCACAATTCGTATTGTGTTTGGTTTCTTGCTCATTGCTCTCATCTGGAAGTTCGATTTCTCGCCATTCATGGTCCTGATTATTGCAATTCTAAACGATGGTACCATCATGACAATCTCAAAGGACAGAGTGAGGCCATCTCCAATGCCTGATAGCTGGAAACTCAAAGAGATATTTGCGACCGGGATTGTGCTTGGAGGTTACTTGGCAACTATGACAGTAATCTTCTTCTGGTTAATGAAAGATACAGATTTCTTCCCAGAGAAGTTCAGTGTAAGACCTATCAAGCACAGTCCTCATGAATTGACAGCTGCTCTTTACCTGCAAGTGAGTATTGTGAGTCAAGCACTTATATTCGTGACCCGATCTCGAACCTGGTCCTTCCTAGAACGTCCCGGTTTGATGTTGATGAGCGCTTTCCTAATCGCACAGCTGGTAGCAACTGTAATAGCTGTTTATGCCGATTGGGACTTTGCCAACATCAAAGGATGTGGATGGGGATGGGCTGGTGTTATATGGATCTACAGTGTTATCTTCTATCTTCCTCTCGACCTTCTGAAGTTCGGCACCCGTTACGTCCTAAGTGGGAGGGGTTGGAATAACTTGATAGACAGCAAGACCGCCTTCACAACCAAGAAAGACTATGGAAAAGAAGAGAGGGAAGCTCAATGGGCTGTTGCACAAAGGACCTTACATGGACTTCAACCTCCACAAACCACAGCTATCTTCCATGAAAAGGCCAGCTATTCGGAACTCTCCGAGATTGCCGAGCAGGCCAAGAGGCGAGCTGAGGCTGCAAGGCTTCGAGAGACCCACACGCTCAAGGGTCATGTTGAATCAGTGATAAAACTCAAAGGATTGGACCTTGACAACATTCAGCAGCATTACACCGTGTGA | 2628 | 46.42 | MAAIMSIALANGEGQPPDWQDFLGITCLLVINSTISFIEENNAGNAAAALMAGLAPKAKVLRDGKWSEEDAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPGEEIFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQRVLAAIGNFCIVSIAFGLVIEIIVMYPIQKRKYRDGINNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSIQGAITKRMTAIEELAGMDVLCSDKTGTLTLNKLTIDKNLTEVFIKGVDKDDVILYAARASRTENQDAIDAAIVGTLADPKEARAGITEVHFFPFNPVDKRTALTYVDAEGKWHRASKGAPEQILTLCNCKEDMKRKVHSTIDKFAERGLRSLAVSRQEVPERSKESPGAPWQFVGLLSLFDPPRHDSAETIRRALELGVNVKMITGDQLAIAKETGRRLGMGSNMYPSASLLGQHQDESIIGIPIEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVRPSPMPDSWKLKEIFATGIVLGGYLATMTVIFFWLMKDTDFFPEKFSVRPIKHSPHELTAALYLQVSIVSQALIFVTRSRTWSFLERPGLMLMSAFLIAQLVATVIAVYADWDFANIKGCGWGWAGVIWIYSVIFYLPLDLLKFGTRYVLSGRGWNNLIDSKTAFTTKKDYGKEEREAQWAVAQRTLHGLQPPQTTAIFHEKASYSELSEIAEQAKRRAEAARLRETHTLKGHVESVIKLKGLDLDNIQQHYTV | 875 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 3467576 | 3471312 | + | Conep16aG0265000.1 | Cone16ag0301 | 454735 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone16ag0301 | 875 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 255 | 261 | IPR018303 | - | |
| Cone16ag0301 | 875 | Gene3D | - | 250 | 549 | IPR023214 | - | |
| Cone16ag0301 | 875 | SUPERFAMILY | HAD-like | 249 | 559 | IPR036412 | - | |
| Cone16ag0301 | 875 | Gene3D | - | 56 | 140 | - | - | |
| Cone16ag0301 | 875 | SUPERFAMILY | Calcium ATPase, transduction domain A | 56 | 153 | IPR008250 | - | |
| Cone16ag0301 | 875 | Pfam | E1-E2 ATPase | 55 | 231 | - | - | |
| Cone16ag0301 | 875 | PRINTS | P-type cation-transporting ATPase superfamily signature | 429 | 439 | - | - | |
| Cone16ag0301 | 875 | PRINTS | P-type cation-transporting ATPase superfamily signature | 103 | 117 | - | - | |
| Cone16ag0301 | 875 | PRINTS | P-type cation-transporting ATPase superfamily signature | 253 | 267 | - | - | |
| Cone16ag0301 | 875 | PRINTS | P-type cation-transporting ATPase superfamily signature | 535 | 547 | - | - | |
| Cone16ag0301 | 875 | PRINTS | P-type cation-transporting ATPase superfamily signature | 512 | 531 | - | - | |
| Cone16ag0301 | 875 | PRINTS | P-type cation-transporting ATPase superfamily signature | 407 | 418 | - | - | |
| Cone16ag0301 | 875 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 1 | 799 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Cone16ag0301 | 875 | FunFam | ATPase 4 plasma membrane-type | 497 | 739 | - | - | |
| Cone16ag0301 | 875 | CDD | P-type_ATPase_H | 1 | 765 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Cone16ag0301 | 875 | SFLD | Haloacid Dehalogenase | 235 | 563 | - | - | |
| Cone16ag0301 | 875 | SFLD | p-type atpase | 235 | 563 | IPR044492 | - | |
| Cone16ag0301 | 875 | Pfam | haloacid dehalogenase-like hydrolase | 249 | 526 | - | - | |
| Cone16ag0301 | 875 | Coils | Coil | 826 | 846 | - | - | |
| Cone16ag0301 | 875 | Gene3D | - | 18 | 739 | - | - | |
| Cone16ag0301 | 875 | Gene3D | - | 824 | 875 | - | - | |
| Cone16ag0301 | 875 | Gene3D | - | 265 | 412 | IPR023299 | GO:0000166(InterPro) | |
| Cone16ag0301 | 875 | NCBIfam | HAD-IC family P-type ATPase | 25 | 270 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone16ag0301 | 875 | NCBIfam | HAD-IC family P-type ATPase | 487 | 600 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone16ag0301 | 875 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 1 | 730 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Cone16ag0301 | 875 | PRINTS | H+-transporting ATPase (proton pump) signature | 484 | 500 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone16ag0301 | 875 | PRINTS | H+-transporting ATPase (proton pump) signature | 512 | 528 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone16ag0301 | 875 | PRINTS | H+-transporting ATPase (proton pump) signature | 684 | 705 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone16ag0301 | 875 | PRINTS | H+-transporting ATPase (proton pump) signature | 369 | 387 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone16ag0301 | 875 | PRINTS | H+-transporting ATPase (proton pump) signature | 543 | 568 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone16ag0301 | 875 | FunFam | Plasma membrane ATPase | 404 | 560 | - | - | |
| Cone16ag0301 | 875 | FunFam | Plasma membrane ATPase | 265 | 412 | - | - | |
| Cone16ag0301 | 875 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 2 | 771 | IPR023298 | - | |
| Cone16ag0301 | 875 | FunFam | Plasma membrane ATPase | 56 | 140 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone16ag0301 | Cone-Chr16:3467576 | Cone18ag1289 | Cone-Chr18:9012121 | 0 | dispersed | |
| Cone16ag0301 | Cone-Chr16:3467576 | Cone16ag0309 | Cone-Chr16:3628541 | 1.51E-20 | proximal | |
| Cone16ag0301 | Cone-Chr16:3467576 | Cone2ag0665 | Cone-Chr2:31727612 | 6.11E-48 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone16ag0301 | K01535 | - | cit:102616096 | 1501.11 |