Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0309 ATGGCAAGTAAGGGACTGCAGAGAACTCACTTTGATGTGTTGGGTCTATGCTGCTCGTCTGAAGTGAGCCTCATTGAAAACATTCTGAAGCCTCTTGATGGGGTTAAAGAGGTTTCAGTCATAGTTCCTACTAGAACTCTCATTGTGGTTCATGATAACCTCCTCGTTTCTCATCTCCAAATTGTGAAGGCACTAAATCAAGCAAGGCTAGAAGCAAATGTAAGAATGTATGGAGATAAGGATTCGCAGAAAATGTGGCCAAGCCCTTGGGCAATAGCAAGTGGTCTTTTGCTTGTGCTCTCACTATTGAAATATGTGTTCCCTCCAATGCAATGGTTAGCTTTAGGTGCCGTTGCAATCGGCATCATTCCCATTCTTCTTAAGGCCATTACTGCCCTTCGAACCTACAGGTTTTATGACATCAACATCCTCATGGTTATTGCAGTGATAGGAACGATTGCCCTGAACGATTATCTAGAGGCAGGGACTATAGTCTTCCTCTTCACTATTGCCGAATGGCTCCAGTCGAGAGCAAGCCACAAGACCAAAGTTGTGATGACATCTCTAATGAGCATTGCCCCGAAAAAAGCAGTCATAGCAGAAACCGGAGAAGAAGTTGACGCAGATGAGGTCAAGTTAAACACGGTTATTGCTGTTAAGGCCGGAGAAGATATACCGATAGATGGAATTGTTATGGATGGAAATTGTGAAGTTGATGAGAAGACTCTAACCGGGGAATCTTTCCCGGTTGCCAAACACAAGGATTCCACCGTCTTTGCTGGAACAATGAATCTAAATGGTTATATTAGTGTGAAAACTACTGCTCTAGCTGAAGATTGTGTTGTGGCCAAAATGGCTAAGCTTGTAGAAGATGCTCAAAACAATAAATCTGGTACTGAGAGAATAATTGACAAATATACCAAATTTTATACCCCAGCGGTTCTATTGATATCGATCCTCATTGCTGTGATTCCAGCTACATTAAGAGTTAAGAATCAAAGCCACTGGTTTCACTTAGCCCTGGTTGTTCTAGTAAGCGCATGCCCATGTGCGCTGATACTTTCTACGCCAGTTGCCACATTTTGTGCTCTTACAAGAGCCGCCTGCTCCGGGCTTCTAATCAAGGGAGGTAACTTTCTCGAAATTCTAGCTAAGGTTAAGGTCATCGCCTTTGATAAAACCGGCACCATTACTAGAGCTGAATTTGTGGTCACCGAGTTTCAAGCTCTTCAAGAAGATGTTACCCTTAACACCTTGCTTTATTGGGTCTCAAGTATAGAGAGCAAGTCAGGTCATCCAATGGCAGATGCAATTGTTGATTATGGAAAATCGCTTTCTATTGAACCGAAACCTGAAAATGTGACGGGGTTTGAAAACTTTCCGGGAGAAGGAGTTCATGGAGTAATAGATGGAAATGACATCTATATTGGAAGTAGGAAGATTGCTGTAAGGGCTGGTTGCAAAACAGTTCCAAACCTTGATGAAGAATCAAAAGAAGGAAAGAGTGTTGGATACATCTTTTGTGGAGGTAGGCTAGTAGGGGATCTTTGTGTGTCTGATGCTTGTCGGACCGGAGCCGAGCAGGCGATTAAAGAGCTCAAGTCAATGGGTATTAAAACAGCTATGCTTACCGGAGATTGTAATGCTGCTGCCATGCACGCCCAAAAACAGCTTAAGAATGCTCTAGAGATAGTCCATTCTGATCTTCTACCAGAAGACAAAGCAAAGATGATCGACCAATTTAAAAAGGAGATAGGACCAACGGCCATGATCGGTGACGGCATTAACGATGCACCAGCCTTAGCTACGGCTGATATCGGGATCTCAATGGGCATCTCCGGTTCCGCGCTCGCATCAGAGACTGGAAACATAATCCTCATGTCGAACGACATAACCAAGATACCAAAAGCTATAAGGCTTTCAAGGCGGGCCCGAAATAAAGTTATTCAAAATGTGATTCTCTCCATAACTACTAAGCTAGCTATCCTTGCTCTCTCTGTTGCCGGTCATCCGCTTGTCTGGGCGGCTGTTCTTGCTGATGTCGGGACTTGCTTACTTGTCATACTCAATAGTATGTTGCTTTTGAGAGGAGTTGACACTCCTAAGAAGAAACATTGCTGCAAAACTTCCGGTGTCCAACATTCTCATGGTAATCAATGCAGTAAGACGAATGGTGCGTCTTCTCATGATCACCATCATGGCTCCCATGGTAATGGTCATCATCACCATCATGATGATCACCACCATCACCATCATGATGATCACCATCATCATCATCATGGATCCCATGACCATCATGGAACTGAAAATGGCCATCACATCCAGAAGCAATGTGCTTCAAAGTGTTCTAATGATCATCACAGGCCAAGTGAACAAGCGAAAGCTTCGAAATCATGCACAGAGGCTCATCATAAATGTATGGATCAAGGTCATGGTCAAGAAAGAGAGAAATGCCATTCAAACCATTGTCATGATCATGAACATATTGATCCCGACTCATCCGATTGTGACTCGAACATGTGCAGTGGAGACGAGAAGAAGTCGGATCATAGCATTATTGATGTTGTTGGCTCAGATCATGTCGAGTTGGTGGAGAAGAAAAAAAGTTGTGATGATCAGGGGAGTTGTAGTAATAGTTTGAAGGCATGTTGCAAAAGTCTGGACAAAAGAGAAGTGGCTGGATGTTGCAAGAGCTACTACGTGAAGGAATGTTGTGGTAATAAGCATTCACACTTAGGCCGCCCTGGCCACTTAAGTGGAGGATTGACTGAAGTTGTGATAGAGTAG 2787 43.6 MASKGLQRTHFDVLGLCCSSEVSLIENILKPLDGVKEVSVIVPTRTLIVVHDNLLVSHLQIVKALNQARLEANVRMYGDKDSQKMWPSPWAIASGLLLVLSLLKYVFPPMQWLALGAVAIGIIPILLKAITALRTYRFYDINILMVIAVIGTIALNDYLEAGTIVFLFTIAEWLQSRASHKTKVVMTSLMSIAPKKAVIAETGEEVDADEVKLNTVIAVKAGEDIPIDGIVMDGNCEVDEKTLTGESFPVAKHKDSTVFAGTMNLNGYISVKTTALAEDCVVAKMAKLVEDAQNNKSGTERIIDKYTKFYTPAVLLISILIAVIPATLRVKNQSHWFHLALVVLVSACPCALILSTPVATFCALTRAACSGLLIKGGNFLEILAKVKVIAFDKTGTITRAEFVVTEFQALQEDVTLNTLLYWVSSIESKSGHPMADAIVDYGKSLSIEPKPENVTGFENFPGEGVHGVIDGNDIYIGSRKIAVRAGCKTVPNLDEESKEGKSVGYIFCGGRLVGDLCVSDACRTGAEQAIKELKSMGIKTAMLTGDCNAAAMHAQKQLKNALEIVHSDLLPEDKAKMIDQFKKEIGPTAMIGDGINDAPALATADIGISMGISGSALASETGNIILMSNDITKIPKAIRLSRRARNKVIQNVILSITTKLAILALSVAGHPLVWAAVLADVGTCLLVILNSMLLLRGVDTPKKKHCCKTSGVQHSHGNQCSKTNGASSHDHHHGSHGNGHHHHHDDHHHHHHDDHHHHHHGSHDHHGTENGHHIQKQCASKCSNDHHRPSEQAKASKSCTEAHHKCMDQGHGQEREKCHSNHCHDHEHIDPDSSDCDSNMCSGDEKKSDHSIIDVVGSDHVELVEKKKSCDDQGSCSNSLKACCKSLDKREVAGCCKSYYVKECCGNKHSHLGRPGHLSGGLTEVVIE 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3628541 3634421 + Conep16aG0265800.1 Cone16ag0309 454743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0309 928 MobiDBLite consensus disorder prediction 711 725 - -
Cone16ag0309 928 SUPERFAMILY HAD-like 388 692 IPR036412 -
Cone16ag0309 928 CDD HMA 11 72 IPR006121 GO:0046872(InterPro)
Cone16ag0309 928 Gene3D - 3 76 - -
Cone16ag0309 928 SFLD Haloacid Dehalogenase 373 643 - -
Cone16ag0309 928 MobiDBLite consensus disorder prediction 779 796 - -
Cone16ag0309 928 Gene3D - 401 522 IPR023299 GO:0000166(InterPro)
Cone16ag0309 928 Pfam E1-E2 ATPase 200 368 - -
Cone16ag0309 928 ProSitePatterns Hypothetical cof family signature 2. 591 613 - -
Cone16ag0309 928 NCBIfam heavy metal translocating P-type ATPase 141 694 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cone16ag0309 928 CDD P-type_ATPase_HM 91 693 - -
Cone16ag0309 928 Gene3D - 178 293 - -
Cone16ag0309 928 MobiDBLite consensus disorder prediction 705 796 - -
Cone16ag0309 928 FunFam Putative cadmium/zinc-transporting ATPase 3 3 76 - -
Cone16ag0309 928 SUPERFAMILY HMA, heavy metal-associated domain 4 73 IPR036163 GO:0046872(InterPro)
Cone16ag0309 928 FunFam Putative cadmium/zinc-transporting ATPase 3 401 522 - -
Cone16ag0309 928 Gene3D - 383 642 IPR023214 -
Cone16ag0309 928 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 1 862 IPR051014 GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Cone16ag0309 928 ProSitePatterns E1-E2 ATPases phosphorylation site. 392 398 IPR018303 -
Cone16ag0309 928 NCBIfam HAD-IC family P-type ATPase 164 667 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone16ag0309 928 FunFam Copper-transporting ATPase 1, putative 179 293 - -
Cone16ag0309 928 ProSiteProfiles Heavy-metal-associated domain profile. 7 73 IPR006121 GO:0046872(InterPro)
Cone16ag0309 928 NCBIfam cadmium family heavy metal-translocating P-type ATPase 141 696 - -
Cone16ag0309 928 PRINTS Cadmium-transporting ATPase signature 176 196 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cone16ag0309 928 PRINTS Cadmium-transporting ATPase signature 255 271 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cone16ag0309 928 PRINTS Cadmium-transporting ATPase signature 22 43 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cone16ag0309 928 PRINTS Cadmium-transporting ATPase signature 274 288 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cone16ag0309 928 MobiDBLite consensus disorder prediction 734 763 - -
Cone16ag0309 928 SUPERFAMILY Calcium ATPase, transduction domain A 204 289 IPR008250 -
Cone16ag0309 928 PRINTS P-type cation-transporting ATPase superfamily signature 239 253 - -
Cone16ag0309 928 PRINTS P-type cation-transporting ATPase superfamily signature 390 404 - -
Cone16ag0309 928 PRINTS P-type cation-transporting ATPase superfamily signature 615 627 - -
Cone16ag0309 928 PRINTS P-type cation-transporting ATPase superfamily signature 591 610 - -
Cone16ag0309 928 PRINTS P-type cation-transporting ATPase superfamily signature 536 546 - -
Cone16ag0309 928 Pfam haloacid dehalogenase-like hydrolase 386 605 - -
Cone16ag0309 928 SFLD p-type atpase 373 643 IPR044492 -
Cone16ag0309 928 SUPERFAMILY Calcium ATPase, transmembrane domain M 141 667 IPR023298 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0309 Cone-Chr16:3628541 Cone5ag1482 Cone-Chr5:9924778 1.80E-67 dispersed
Cone16ag0301 Cone-Chr16:3467576 Cone16ag0309 Cone-Chr16:3628541 1.51E-20 proximal
Cone11ag0196 Cone-Chr11:963847 Cone16ag0309 Cone-Chr16:3628541 1.33E-20 wgd
Cone16ag0309 Cone-Chr16:3628541 Cone18ag1289 Cone-Chr18:9012121 2.77E-17 wgd
Cone16ag0309 Cone-Chr16:3628541 Cone2ag0683 Cone-Chr2:32188891 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0309 K01534 - rcu:8289731 1049.27