Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0322 ATGGACAACATCTTCGAGGAATACAAGAACTACTGGGAAACCACCATGTTCCTTCAAACCGAAGAGCTTGACAGCTGGGCTTTAGACGAGGCCCTTTCCGGCTACTCCGATTCCAGCTCACCTGACGGAGCTGCCACGTCATCGTCCTTGGTGGCATCGAAGAACATCGTATCTGAGAGGAATAGAAGGAAGAAGCTCAATGACAGGCTCTTGGCCCTTAGAGCGGTTGTCCCCAAAATCAGCAAGATGGACAAGGCTTCTATTATAAAAGATGCGATTGAGTATATACAAGAGCTGCACGAGCAGGAGAGAAGGATCCAAGCAGAGATCAGTGAGCTCGAGTCAGGAAAATCAATTGAAAGTATTAATAATATTAGTAATTACGACGTGGGCAAAGACGCCTTTCCTCACGATCTCTTCCTCAAATCGAAGAAGACGAGAACTGATCAAGATCTTCTTCACTTGTATGATTCCTCCCATGGATCGTCAACCCTAATTTCTTCCCCTCTTGAACTCCTCGATCTGACAGTAACATACATGGGGGAACAGACAATGGTAGTGAGCTTGACGTGCAGTAAAAGAACCGACACGATGGTTAAACTGTGTCAAGTGTTCGAATCTTTGAAGCTCAAAATTATTACAGCCAATCTCACTTCTGTCTCCGGCAGGCTTTTGAAGACACTCTTGATTGAGGCTGAGCAAGAGGAGAAAGATCATGTGAAGACTAAAATAGAGACAGCCATTGCAGCTCTGAATGATCCACAGAGCCCTATGAGCATCTAA 783 45.34 MDNIFEEYKNYWETTMFLQTEELDSWALDEALSGYSDSSSPDGAATSSSLVASKNIVSERNRRKKLNDRLLALRAVVPKISKMDKASIIKDAIEYIQELHEQERRIQAEISELESGKSIESINNISNYDVGKDAFPHDLFLKSKKTRTDQDLLHLYDSSHGSSTLISSPLELLDLTVTYMGEQTMVVSLTCSKRTDTMVKLCQVFESLKLKIITANLTSVSGRLLKTLLIEAEQEEKDHVKTKIETAIAALNDPQSPMSI 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3960175 3964767 - Conep16aG0267100.1 Cone16ag0322 454756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0322 260 Coils Coil 96 116 - -
Cone16ag0322 260 SMART finulus 56 105 IPR011598 GO:0046983(InterPro)
Cone16ag0322 260 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 37 242 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone16ag0322 260 Gene3D - 48 116 IPR036638 GO:0046983(InterPro)
Cone16ag0322 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 114 IPR036638 GO:0046983(InterPro)
Cone16ag0322 260 Coils Coil 230 250 - -
Cone16ag0322 260 Pfam Helix-loop-helix DNA-binding domain 56 100 IPR011598 GO:0046983(InterPro)
Cone16ag0322 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 99 IPR011598 GO:0046983(InterPro)
Cone16ag0322 260 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 46 118 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0322 Cone-Chr16:3960175 Cone19ag1032 Cone-Chr19:7672810 3.97E-18 dispersed
Cone16ag0322 Cone-Chr16:3960175 Cone2ag0666 Cone-Chr2:31780609 9.11E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44938 PF00254 FKBP_C 1.70E-18 CL0487 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0322 - - - 0.0