Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0327 ATGAAGCCACCCGCTAACAATGCTGGAGCTGCCTCAGCCACCGTTACATCCAATCCGTGTGAAGGAATTGCAGAGAAGAAGAGCATAAAGCAAGAGCTATGGCAAGCCTGTGCCGGACCGCTGGTCAACTTGCCACTGGCTGGGACCCACGTCGTCTATTTTCCTCAGGGTCACAGCGAGCAGGTTGCTGCGTCTATGAAGAAAGATGTGGATGCTCAAATTCCAAGCTACCCCAATCTTCCTTCAGAGCTATTATGTCTCCTTCACAATGTCACCTTGCACGCAGACCCAGAAACAGACGAAGTGTATGCTCAAATGACACTTCAACCAGTTCCTTCTTTTGACAAGGAGGCATTATTGAGATCGGATCTATCACTTAAGTCGAATAAGCCCCAATCAGAGTTCTTCTGTAAAACATTAACAGCAAGTGATACAAGCACTCATGGAGGATTCTCTGTTCCTCGTCGTTCTGCAGAGAAGATATTCCCTCCTCTTGATTTCGCCATGCAACCACCTGCTCAAGAACTTGTTGCTAGGGATTTGCATGACAATATGTGGACTTTCCGCCATATTTATAGGGGACAACCCAAGCGTCATTTGTTGACAACGGGATGGAGTCTATTTGTTAGCGGGAAGAGACTTTCCACCGGTGATTCAGTTTTGTTTATTAGAGATGAAAAGCAGCAGCTTCTTTTGGGCACTAGACGCGCAAACCGGCAGCCCACCAATCTTTCATCATCTGTATTATCAAGTGACAGTATGCATATTGGGATTCTTGCAGCAGCAGCCCATGCTGCTGCAAACAATAGCCCCTTTACAGTATTCTATAATCCGAGGGCTAGTCCGTCAGAATTTGTTATCCCTTTGGCCAAGTATTACAAAGCAGTGTATGGAAACCAATTATCACTTGGTATGCGCTTTCGGATGATGTTTGAAACTGAGGAGTCTGGAACAAGAAGGTATATGGGCACTATTACAGGTATTAGTGATCTTGACCCTATTAGATGGAAAAACTCCCAGTGGCGTAACTTGCAGGTTGGGTGGGATGAGTCAACTGCAGGGGAAAGGCGACATAGAGTTTCAATCTGGGAGATTGAACCAGTGACTGCTCCATTTTTTATCTGCCCCCCTCCATTCCTCAGATCCAAGCGTCCAAGGCAACCAGGAATGCCCGATAATGAATCTTCCGATTTAGATAACCTATTTAAGAGAACGATGCCTTGGCTCAATGATGATATCTGCATGAAGGATCCTCAGGCAATTCCTGGCCTAAGCTTAGTTCAATGGATGAACATGCAGCAAAACCCTGCTCTGTCTAACTCAATTCAGCCAAATTACATGCATTCCATTTCTGGGTCTTTGTTACAAAACCTTACTGGACCACCAGACCTTTCTAGACAGTTAGGTTTCCCATCAACAACCCAAATACCCCAATCAAACAACATTCAGTTCTCAGCCCAAAGACTCTCTCCCCAAGCTCAGCCGCTTGACCAACTCCCTAAGCTGCCTCCAAATTCTGTGAACCCATTAGGATCCATGTTACAACCACAGCAACTGTTAGGTAGTGATATTTCTCAACAGTTTAAGCAGCAAAATGTGGTTACTCAACAAAGCCAACCACCTTCAACTCAAATCCCACCCCAAATACTTCAGCCCCAGGGTCTTCATGTCCAGGCTAATAATAGTAATAATATCTTCCAACAGCAACAGCGATCCATTCAAAATCATCCCCACAGAAACAACCTCCCTCAGAATCTGCAATTGCAGCAGCAGCAGCAGCAGCAACAACAACAAAACCCGAGTCAGAATCAACAGAAAAACCTGATTCAATCCCATATCCCTCCAGATCAATTAAATCAGCAGTTCCAAATGTCAGACAGTCAGCTTCAGATTCAACTCTTACAGAAGCTTCAGCAGCAGTCTACACTACTACAATCCCAAATCCAAGATCAGCAGAGACAACAGCTGTCAGATGGGTCTCACTCCCCGAGCTTCTCCCGCCCTCTAATGCCTGCTGCTCAAATGCTCGAGAATCCTCAAGCAATCCAGACCTTGCTCCCTCGGTCAAACGCATTCCCACAGCAGATATCAAAGGCTCAGGAAAATAACAGGTTTACTCATCCACCCTTGCAGACAAAGCTTCAACAAGGAAGTGGGTTGCTCACTGACATGTCCGGGCCCACGGGACATGTCAGTATTGTAGTATCCGGACCTGCTGGAGCGGGTCAATCTGGGGTAACTGATGATGTTCCGTCTTGTTCCACTTCACCTTCCACTAACAACTGTCCAAGTGTGGTACAGCCTCTTCATATGAACGGTGGGAGGGTTCATAGGAGTACAGGTTTGGGGGAGGACATGGCTCAATCTTCTACCACATTTCTTGGTCCGCATGCTTTGGAAACTATATCTTCTTCAAATGCAAATTTAGTCAAGGATTTGCAGCACAAGGTTGAGGCTAAACCACCCATGAATATTTCCATGAATCAAAATCAAAACCAAGGAATTTTCGCCCAACAGGCTTTGTTGAATAGCACAACTGGGCAGCCAGAGTTCTTGGATACATCGTCTTCAACCTCAGTTTGCCTTTCTCAGAATGATATTCGTTTGCAGCAGAACAACAACAATTCCATATCATTTAATCCACAATCGCTGTTGTTCAGAGATTCAAGTCAAGATCTGGAGGTTCAAGCAAATAGACAAATGGGAGCACACCTAAATCCTGACCCTGTGCTAAACAAGGGCATGGTGGCGTTGGAGAAAGATTTCCCAAATAATTTTTCTTCCAACGGCTTGCTTGCGACAAGCTATGAAAACAACAAAGATCCTCAAGCTGAACTTTCATCTTCTATGGTTTCCCAATCATTTGGAGTTCCAGATATGGCATTTAATTCCATGGATTCAACAATAAATGATAGCAGCTTCTTGAATAGAGGTCCATGGGCCCCACCCCCTCAATTTCAGCGAATGCGAACATATACCAAGGTATACAAACGTGGAGCTGTTGGTAGATCCATAGATATCACCCGATATTCAAACTATGATGAGCTTAAACAAGATCTGGCTCGCATGTTTGGTATAGAGGGACAGTTGGAAGACCGCCAGAGAGTAGGCTGGAAACTTGTCTATGTGGATCATGAGAGTGATGTTCTACTAGTAGGAGACGACCCGTGGGAGGAGTTTGTGAACTGCATACGATGCATAAAGATCCTATCACCTCAAGAAGTCCAGCAAATGAGCCTCAACGGAGATTTTGGAAACTGTGTCCTTCCAAATCAAGCATGTAGCAGTTCTGATGGCGGAAATGCTTAG 3309 45.21 MKPPANNAGAASATVTSNPCEGIAEKKSIKQELWQACAGPLVNLPLAGTHVVYFPQGHSEQVAASMKKDVDAQIPSYPNLPSELLCLLHNVTLHADPETDEVYAQMTLQPVPSFDKEALLRSDLSLKSNKPQSEFFCKTLTASDTSTHGGFSVPRRSAEKIFPPLDFAMQPPAQELVARDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVSGKRLSTGDSVLFIRDEKQQLLLGTRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYGNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPIRWKNSQWRNLQVGWDESTAGERRHRVSIWEIEPVTAPFFICPPPFLRSKRPRQPGMPDNESSDLDNLFKRTMPWLNDDICMKDPQAIPGLSLVQWMNMQQNPALSNSIQPNYMHSISGSLLQNLTGPPDLSRQLGFPSTTQIPQSNNIQFSAQRLSPQAQPLDQLPKLPPNSVNPLGSMLQPQQLLGSDISQQFKQQNVVTQQSQPPSTQIPPQILQPQGLHVQANNSNNIFQQQQRSIQNHPHRNNLPQNLQLQQQQQQQQQQNPSQNQQKNLIQSHIPPDQLNQQFQMSDSQLQIQLLQKLQQQSTLLQSQIQDQQRQQLSDGSHSPSFSRPLMPAAQMLENPQAIQTLLPRSNAFPQQISKAQENNRFTHPPLQTKLQQGSGLLTDMSGPTGHVSIVVSGPAGAGQSGVTDDVPSCSTSPSTNNCPSVVQPLHMNGGRVHRSTGLGEDMAQSSTTFLGPHALETISSSNANLVKDLQHKVEAKPPMNISMNQNQNQGIFAQQALLNSTTGQPEFLDTSSSTSVCLSQNDIRLQQNNNNSISFNPQSLLFRDSSQDLEVQANRQMGAHLNPDPVLNKGMVALEKDFPNNFSSNGLLATSYENNKDPQAELSSSMVSQSFGVPDMAFNSMDSTINDSSFLNRGPWAPPPQFQRMRTYTKVYKRGAVGRSIDITRYSNYDELKQDLARMFGIEGQLEDRQRVGWKLVYVDHESDVLLVGDDPWEEFVNCIRCIKILSPQEVQQMSLNGDFGNCVLPNQACSSSDGGNA 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4148175 4155849 + Conep16aG0267600.1 Cone16ag0327 454761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0327 1102 Gene3D - 985 1079 - -
Cone16ag0327 1102 MobiDBLite consensus disorder prediction 586 607 - -
Cone16ag0327 1102 FunFam Auxin response factor 134 238 - -
Cone16ag0327 1102 Gene3D - 300 371 - -
Cone16ag0327 1102 MobiDBLite consensus disorder prediction 648 668 - -
Cone16ag0327 1102 ProSiteProfiles PB1 domain profile. 990 1074 IPR053793 -
Cone16ag0327 1102 SUPERFAMILY CAD & PB1 domains 1003 1068 - -
Cone16ag0327 1102 MobiDBLite consensus disorder prediction 453 477 - -
Cone16ag0327 1102 Pfam B3 DNA binding domain 136 237 IPR003340 GO:0003677(InterPro)
Cone16ag0327 1102 Pfam AUX/IAA family 988 1075 IPR033389 -
Cone16ag0327 1102 ProSiteProfiles B3 DNA-binding domain profile. 136 238 IPR003340 GO:0003677(InterPro)
Cone16ag0327 1102 MobiDBLite consensus disorder prediction 739 768 - -
Cone16ag0327 1102 CDD B3_DNA 135 227 IPR003340 GO:0003677(InterPro)
Cone16ag0327 1102 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 1081 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone16ag0327 1102 MobiDBLite consensus disorder prediction 648 664 - -
Cone16ag0327 1102 FunFam Auxin response factor 300 371 - -
Cone16ag0327 1102 FunFam Auxin response factor 985 1079 - -
Cone16ag0327 1102 Pfam Auxin response factor 262 345 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone16ag0327 1102 MobiDBLite consensus disorder prediction 747 767 - -
Cone16ag0327 1102 Coils Coil 634 654 - -
Cone16ag0327 1102 Gene3D - 134 237 IPR015300 -
Cone16ag0327 1102 SUPERFAMILY DNA-binding pseudobarrel domain 127 265 IPR015300 -
Cone16ag0327 1102 SMART B3_2 136 238 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0327 Cone-Chr16:4148175 Cone4ag0837 Cone-Chr4:5421395 3.61E-281 dispersed
Cone4ag1959 Cone-Chr4:13780687 Cone16ag0327 Cone-Chr16:4148175 2.07E-200 transposed
Cone7ag1874 Cone-Chr7:12073372 Cone16ag0327 Cone-Chr16:4148175 7.63E-203 transposed
Cone16ag0327 Cone-Chr16:4148175 Cone2ag0660 Cone-Chr2:31602299 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44939 PF00254 FKBP_C 0.00011 CL0487 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0327 - - - 0.0