Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0334 ATGATACCCTTTTCATGGGCTGCCGCCGCTCCTGAATCCGATTCTCTAACCCTTATCAAGTTTAAGAATTCTCTTGAAAACAACACCGCTCTAACTAGTTGGAACCAATCTTCTAAACCGTGCGATGGTGATCGAACAATCTGGGATGGTGTTCTTTGCGACGATGGATTTGTTTGGGGATTGAATCTTCAAAACATTGGGCTTACAGGAAAAATTGACCTAGAAATCCTAAAGGAATTGCCCGAACTGAGAGCCCTCGGATTCATGACCAACAACTTTGATGGGCCGTTTCCAAACATAAAGCAACTGGGAATGCTGAAATCAATTTATTTGTCGAACAATCAATTTTCCGGAGAGATTCCAAGCGATGCGTTTTCGAACATGGGGTCGTTGAAGAAAGTTCATTTGGCACAGAATAAGTTTACGGGGAAGATTCCTTCGTCGTTAGTTGAGCTATCTAAGCTTGTGGAGCTGAGACTTGAAGACAATCAATTTAGCGGGCAGATACCTAATTTTAACCAGACCAGATTCACGTCTTTTAATGTGTCCAATAATATGCTTGAAGGTGAGGTTCCAGAAAGGCTAAGTGTGATGGATCCTACCTCCTTTTCTGGCAACGAGGGTTTATGTGGGAAGCCTCTAACAGTACCATGCAGCAATACTACCCAACAAAACTCAGGCGGCAGTACTACTTTTACAAACAGTAATAGCGCAGGAAAAAGTTCGTCTACATTACTGAAAGTCGTCATTCCAATAGTTATAGTTGTAATCCTAGTAATAGTTTCTGCAATCATCTTCTTCCTCTACCGTCGAAGAAATAGAGCATCTTCATCCATAGAGGCTCCATCTCATAACGTTGAACGGGCAGTAAGTATCAAGGAATCAAACCCCGAAAAGTTAGCGTCATCAGAAGAATCTTCACCAAACCAGATCGGAAATGGGAGTGGGGGAAAGGCAGATAATTTGAAGCTCTCATTTGTAAGAGATGATAGAGAGAAGTTTGAGATTCAGGATTTACTAAGAGCCTCGGCAGAAGTATTAGGAAGTGGGTCCTTTGGATCTTCTTACAAGACAGTATTGTTTAATGGCCGGGCAGTGATGGTTGTAAAGAGATTCAAGCATATGAACAATGTGGGGAAAGAGGAGTTTCATGAACATATGAGAAGGATTGGAAGGTTAAGACATCCTAATGTACTTCCCCTTGTGGCTTACTACTATAAGAGAGAAGAGAAGCTCTTGGTTGCTGACTTTGTAAGTAACGGTAGCTTGGCTGTTCAACTTCATGGTCACCGAGCTGTAGGGCAACCACGCCTAGACTGGCCAACCCGACTGAAGATTGTACAAGGTGTAGCCAATGGTCTTAAATATCTCTTCACTGAGCTTCCAAGCCTAACTGTACCTCATGGTCACCTAAAATCATCAAATGTTCTTCTCAACGAAACCTTCGAGCCACTCCTCACAGACTACGGTCTTATTCCGGTGACTAATCATGAACAGGCACATGACCTCATGGTTGCTTACAAATCACCAGAATACATACAGCAAGGACGAGTAACAAAGAAGACGGATGCATGGAACTTTGGAGTGTTGATATTAGAGATCTTAACGGGAAAATTTCCGACGTTTTTCATACAACAAGGGAAGGGGATGAGCAGTGGGGAGGATTTGGCAAGATGGGTCCATCTGGTTCCCGAAGAGGAATGGTTGGATAATGTCATTGACCCGGAGATTGTTGAGGAAATAAAAAAGAATAGTACATATCAGAGGGAGATATTTGAGATTTTGAATATAGGGTTGGCTTGTTGTGAAGAAAATGTGCAGAAGAGGATGGATATTAAGGAGGCTGTTGAAACGATTGAAGAGTTGAAGGAGAGATTGGAGATGACTACGACTCCTGATCATGAAGATTGA 1911 42.44 MIPFSWAAAAPESDSLTLIKFKNSLENNTALTSWNQSSKPCDGDRTIWDGVLCDDGFVWGLNLQNIGLTGKIDLEILKELPELRALGFMTNNFDGPFPNIKQLGMLKSIYLSNNQFSGEIPSDAFSNMGSLKKVHLAQNKFTGKIPSSLVELSKLVELRLEDNQFSGQIPNFNQTRFTSFNVSNNMLEGEVPERLSVMDPTSFSGNEGLCGKPLTVPCSNTTQQNSGGSTTFTNSNSAGKSSSTLLKVVIPIVIVVILVIVSAIIFFLYRRRNRASSSIEAPSHNVERAVSIKESNPEKLASSEESSPNQIGNGSGGKADNLKLSFVRDDREKFEIQDLLRASAEVLGSGSFGSSYKTVLFNGRAVMVVKRFKHMNNVGKEEFHEHMRRIGRLRHPNVLPLVAYYYKREEKLLVADFVSNGSLAVQLHGHRAVGQPRLDWPTRLKIVQGVANGLKYLFTELPSLTVPHGHLKSSNVLLNETFEPLLTDYGLIPVTNHEQAHDLMVAYKSPEYIQQGRVTKKTDAWNFGVLILEILTGKFPTFFIQQGKGMSSGEDLARWVHLVPEEEWLDNVIDPEIVEEIKKNSTYQREIFEILNIGLACCEENVQKRMDIKEAVETIEELKERLEMTTTPDHED 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4275471 4278682 - Conep16aG0268300.1 Cone16ag0334 454768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0334 636 Gene3D Ribonuclease Inhibitor 126 220 IPR032675 -
Cone16ag0334 636 SUPERFAMILY Protein kinase-like (PK-like) 345 628 IPR011009 -
Cone16ag0334 636 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 98 218 - -
Cone16ag0334 636 MobiDBLite consensus disorder prediction 221 240 - -
Cone16ag0334 636 Pfam Leucine rich repeat 106 165 IPR001611 GO:0005515(InterPro)
Cone16ag0334 636 FunFam pollen receptor-like kinase 1 310 417 - -
Cone16ag0334 636 Coils Coil 605 629 - -
Cone16ag0334 636 Gene3D Transferase(Phosphotransferase) domain 1 418 635 - -
Cone16ag0334 636 Gene3D Phosphorylase Kinase; domain 1 313 417 - -
Cone16ag0334 636 ProSiteProfiles Protein kinase domain profile. 341 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0334 636 Pfam Protein tyrosine and serine/threonine kinase 345 617 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0334 636 Gene3D Ribonuclease Inhibitor 14 125 IPR032675 -
Cone16ag0334 636 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 623 IPR046959 -
Cone16ag0334 636 Pfam Leucine rich repeat N-terminal domain 12 54 IPR013210 -
Cone16ag0334 636 MobiDBLite consensus disorder prediction 278 317 - -
Cone16ag0334 636 SUPERFAMILY L domain-like 12 197 - -
Cone16ag0334 636 MobiDBLite consensus disorder prediction 301 316 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0334 Cone-Chr16:4275471 Cone20ag0623 Cone-Chr20:3723995 2.31E-156 dispersed
Cone16ag0334 Cone-Chr16:4275471 Cone7ag0796 Cone-Chr7:5641062 7.48E-177 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82203 PF00254 FKBP_C 3.50E-18 CL0487 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0334 K28077 - mdm:103404081 667.922