Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0353 ATGTTTTCTAGATCTTCCTTAGACCTGTTGAATCTGGTCTCTGTGGAAGATTACAGAGGTCTGACCACTCGAATTCCGAAAGTAATGACCGTTCCAGGCATGATTTCAGAATTTGAAGAAACAGAGCAAGAAGGAAAAATTAAAAGTCCTCAGAATTCGAATTCCGATCCGGACTCGTCGGTTTCTCAAGAACGCAGAATCATCGTCGCGAACCAGTTGCCGATTCGAGCTCAATTCGACAGGGATAATTCTAAATGGCGGTTCGAGTTAGACCCAGATAGTCTCGTTCTTCAGCTCAAAGATGGCTTCTCGCCTGACATAGAAGTCATCTACGTCGGCTCGTTAAAAGCCGATATCGACCCGAAAGATCAAGAAGAAGTGGCTCAAACCCTACTCGATCAATTCCGGTGCGTTCCCACTTTCTTGCCTTTAGAAACTCAAAACGATTTCTACCACGGTTTCTGTAAACACTATCTATGGCCTCTGTTTCATTACATGCTTCCTATCTCTTCCTCTCACGGAGAGCGGTTTAACCGGGCCCACTGGAAAGCCTACGTGTCGGCAAACAAGATATTTGCCGATAAAGTCATGGAGGTGTTAAACCCAGATGAGGATTACGTCTGGGTTCATGATTATCATCTGATGATCTTACCCACTTTCTTGAGGAAAAGATATCACAGAGTGAAGCTAGGGTTCTTCCTGCATAGTCCTTTCCCTTCTTCTGAAATTTACCGGACTCTACCGATTCGCGACGATATTTTACGGGCTCTGTTAAACTGCGATCTAATCGGGTTCCATACTTTTGATTATGCAAGACACTTCCTGTCTTGTTGTAGTAGAATGCTTGGTCTGGATTACAAATCGAAGAGGGGCTATATAGGACTAGAATATTACGGCCGGACCGTAAGTATTAAGATTTTGCCGGTCGGAATTCATTTGGGTCAGCTTGAATCAATCTTATCCCTACCAGAAACGGCCGAAAAAGTTAAAGAATTGAAGGTACAGTTCGAAGGGAAAATTGTTATGTTAGGGGTTGATGATATGGATTTGTTTAAAGGAATCAGCTTGAAGTTTCTTGCAATGGGGCAGCTTCTAAAGCAGCACGCGGATCTAAGGGGTGAAGTTGTTTTAGTCCAAATTACTAATCCGGCAAGAAGCCAAGGCAGAGACGCACAAGATGTTGAAAATGAGATCAGATCTATTGCTGAAGATATCAATTTTAAATACGGAAATCCAGGTTATCAACCGATTGTTTTTACAAATGGGCCCGTTACGACTTTAGAGAAGGCGGCCTATTACGCGATTTCAGAATGTTGTGTTGTGAATGCTGTAAGAGATGGTATGAATTTGGTTCCGTACCAGTACACAGTTTGTAGACAGAAAAGCCCGGTTTTGGATAAGGAGGACGATACAGGAACGAGAAAGAGTGTAATAGTTGTGTCGGAATTTATTGGGTGCTCGCCTTCTTTAAGTGGGGCCATCCGGGTCAACCCGTGGAACATAGATGCAGTCTCTGAAGCAATGAATCTGGCCATTACAATGTCGGAATCGGAAAAACAGTTGCGGCATGAGAAGCATTATAAGTATATAAATTCACATGATGTGGCTTATTGGGCCCGGAGTTTCGATCAAGATCTGGAACGGGCCTGTCGGGATCATTACAGAAACAGGTGTTGGGGAATTGGGTTCGCGTTGGGATTTAGAGTCGTTGCATTGGGCCCGAACTTCCGGAAGCTTTCTGTTGAACATATTTGTTTGGGTTATAGGAATACGAAAAGCAGGTTGATTCTGTTGGATTATGATGGGACGGTGATGCCTCAGTGCTCAGTCGATAAAACTCCGAGCAAGGAAGTTATTACTGTCTTGAACAGTTTGTGTAGTGACCCGAAAAATGTGGTTTTCATAGTTAGTGGTAGGGGGAAAGATTCTCTCAGCAAGTGGTTCTCTCCTTGTGAGAAACTAGGCCTTTCTGCAGAGCATGGATACTTCACTAGGTGGACTAGGGATTCTTCATGGGAGACTTGCTCTATGGCAATGGACTTCGATTGGAAGAAGATTGTGGAACCAGTTGTGGCTCTATACACCGAGGCAACTGATGGGTCTTTTATCGAAGAGAAGGAAAGTGCTATTGTTTGGCATCATCAAGAAGCAGACCCAGATTTTGGCTCATCTCAAGCTAAAGAGCTTCTAGATCATCTCGAGAATGTGCTCGCTAATGAACCTGTAGTAGTTAAACGTGGCCAACACATTGTCGAAGTTAAACCTCAGGGTATAAGTAAAGGAAGAGTTGTGGAGAATCTGATATCGACTATGAGGAGTAATGGGAAGAGTCCAGATTTTGTGTTGTGTATCGGAGATGACCGGTCAGATGAAGACATGTTTGAAAGTATTGCTCGGTCAGTTTCGGACCCTTCTTTGCCTGCTATAAAGGAAGTGTTTGCTTGCACTGTGGGTCAGAAGCCAAGCATGGCTAAGTACTATCTTGACGATACGGTGGAGGTGATCAACTTGATCGAAGGGATGGCTGCAGTTTCGGACCCTCCACAGGCACTGAAACAGAAACCGGGGAGTGTGGAGGGGAGGTCATCGTTTGAGGGGTTTATTTGA 2607 44.23 MFSRSSLDLLNLVSVEDYRGLTTRIPKVMTVPGMISEFEETEQEGKIKSPQNSNSDPDSSVSQERRIIVANQLPIRAQFDRDNSKWRFELDPDSLVLQLKDGFSPDIEVIYVGSLKADIDPKDQEEVAQTLLDQFRCVPTFLPLETQNDFYHGFCKHYLWPLFHYMLPISSSHGERFNRAHWKAYVSANKIFADKVMEVLNPDEDYVWVHDYHLMILPTFLRKRYHRVKLGFFLHSPFPSSEIYRTLPIRDDILRALLNCDLIGFHTFDYARHFLSCCSRMLGLDYKSKRGYIGLEYYGRTVSIKILPVGIHLGQLESILSLPETAEKVKELKVQFEGKIVMLGVDDMDLFKGISLKFLAMGQLLKQHADLRGEVVLVQITNPARSQGRDAQDVENEIRSIAEDINFKYGNPGYQPIVFTNGPVTTLEKAAYYAISECCVVNAVRDGMNLVPYQYTVCRQKSPVLDKEDDTGTRKSVIVVSEFIGCSPSLSGAIRVNPWNIDAVSEAMNLAITMSESEKQLRHEKHYKYINSHDVAYWARSFDQDLERACRDHYRNRCWGIGFALGFRVVALGPNFRKLSVEHICLGYRNTKSRLILLDYDGTVMPQCSVDKTPSKEVITVLNSLCSDPKNVVFIVSGRGKDSLSKWFSPCEKLGLSAEHGYFTRWTRDSSWETCSMAMDFDWKKIVEPVVALYTEATDGSFIEEKESAIVWHHQEADPDFGSSQAKELLDHLENVLANEPVVVKRGQHIVEVKPQGISKGRVVENLISTMRSNGKSPDFVLCIGDDRSDEDMFESIARSVSDPSLPAIKEVFACTVGQKPSMAKYYLDDTVEVINLIEGMAAVSDPPQALKQKPGSVEGRSSFEGFI 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5842999 5845775 + Conep16aG0271000.1 Cone16ag0353 454787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0353 868 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 58 317 - -
Cone16ag0353 868 MobiDBLite consensus disorder prediction 47 63 - -
Cone16ag0353 868 Gene3D Glycogen Phosphorylase B; 57 317 - -
Cone16ag0353 868 CDD GT20_TPS 65 547 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone16ag0353 868 MobiDBLite consensus disorder prediction 39 63 - -
Cone16ag0353 868 FunFam Trehalose-6-phosphate synthase 2 677 756 - -
Cone16ag0353 868 Gene3D - 596 828 IPR023214 -
Cone16ag0353 868 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 593 710 - -
Cone16ag0353 868 SUPERFAMILY HAD-like 594 841 IPR036412 -
Cone16ag0353 868 FunFam Alpha,alpha-trehalose-phosphate synthase 319 531 - -
Cone16ag0353 868 Pfam Trehalose-phosphatase 597 831 IPR003337 GO:0005992(InterPro)
Cone16ag0353 868 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 65 551 - -
Cone16ag0353 868 Gene3D Glycogen Phosphorylase B; 318 532 - -
Cone16ag0353 868 Pfam Glycosyltransferase family 20 65 547 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone16ag0353 868 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 723 854 - -
Cone16ag0353 868 NCBIfam trehalose-phosphatase 592 839 IPR003337 GO:0005992(InterPro)
Cone16ag0353 868 Gene3D - 676 756 - -
Cone16ag0353 868 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 843 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cone16ag0353 868 NCBIfam HAD-IIB family hydrolase 595 799 IPR006379 -
Cone16ag0353 868 CDD HAD_TPP 595 836 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1029 Cone-Chr13:8565499 Cone16ag0353 Cone-Chr16:5842999 0 dispersed
Cone16ag0353 Cone-Chr16:5842999 Cone19ag1019 Cone-Chr19:7611801 0 dispersed
Cone16ag0353 Cone-Chr16:5842999 Cone2ag0608 Cone-Chr2:3682922 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0353 K16055 - gmx:100810498 1306.97