Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0355 ATGGAGCTCAAGAAGGAAAAGCTTGTAAGGTTCTATTCCGATGGGAAACAACAACACGATTTGGCAGTAGTACCTGAGCCATTGCAACTTGAAACATCATCATCATCTTCATTTCTCAGATCCGAATATGGACTAGTGGTACCCGAAAGAAGTATATACAGTCAAACTTTCAGAACCGGAAAGTTAACCATTTTCCCAGTGGACAATTTGCCTTGGTCCACGAGGATTCTCGATCCAAGCAGTGAAATTGTCTTGCAATGGAACTGGGTTTTCATTGTCGCATGCTTAGTCGCTCTTTTTGTCGACCCCTTATACTTTTACTTGCCAGCTTTAGAAAAGGATGTGAACTCATCCTGTGTGAAGATAGACTCTAATTTACGGATCATTGTGACATGTTTTCGGACACTAGCGGATATTTTTTATCTGCTCCATATGGTTATAAAGTTTAGGACAGCATATGTTGCGCCTAGTTCCCGTGTTTTTGGAAGGGGGGAACTTGTTATGGACCCGAAGAAGATTGCTTGTAAGTATATTAGATCGGACTTCTTCATTGATCTTATCGCCACTCTTCCTCTTCCTCAGATTGTTATTTGGTTAATTATACCTGCGACGAGAAGCAGTCAAATGGATCACAAGAACAATGCCCTTGTATTAATTGTTCTGTTTCAATATATACCGAGATTATATTTGATCTTCCCGTTAAGTGCAGAGATAGTTAAAGCGGCTGGATTCGTAACTAAGACTGCATGGGCTGGGGCTGCTTATAATCTCTTGCTTTTTATGTTGGCTAGCCATGTTTTGGGTGCAGCATGGTACTTGCTATCTATTGACCGGTATACCTCGTGCTTGAAATCGCATTGTATAAAAGAGGAATCTCACCCTATGAAATGCCTTCTTAGTTACTTGGATTGTGATACTTTGGGCTACACTGATCGCAAGCTATGGGTAAATGCTACAACTGTTTTTAACAGCTGTGATCCTGATACAAAACATTTCAAGTATGGAATTTTTGAAAAGGCCATGACAAAAAATGTTGTCTCATCTAACTTCGTTAAGAAGTACTTCTACTGCTTATGGTGGGGCTTGCAAAACTTGAGTTCATATGGACAGAATTTATCGACAAGCACTTTCATGGGAGAGACGTTGTTTGCTATTTTAATCGCCATCTTGGGTCTTGTATTATTTGCCCATTTGATTGGAAATATGCAGACATACTTGCAATCTATTACTGTGAGGCTTGAGGAATGGAGGCTTAAGCGAAGAGACACGGAAGAGTGGATGAGACATAGACAACTCCCCGAAGATTTGAAACAGCGGGTCCGCTGTTTTGTTCAGTACAAATGGCTTGCAACTCGAGGAGTCGATGAAGAAACCATCCTCAATAGCTTACCTGCTGATCTTCGTCGTGATATCCAGTGCCACCTATGCTTAAATCTTGTCCGTCGAGTCCCATTTTTCTCTCAAATGGACGATCAACTCCTTGATGCAATATGCGAACGGCTAGTCTCCTCCCTGAGCACAGAAGGAACCTACATAGTCCGAGAAGGCGACCCCGTAACGGAGATGCTCTTCATCATCAGAGGCCGACTAGAGAGCTCCACGACCAATGGAGGCCGGACTGGTTTCTTCAACTCCATAACTTTACGGCCTGGAGACTTTTGCGGTGAAGAGCTACTCACTTGGGCCTTGCTCCCCAAATCCACTATCAACTTGCCTTCTTCAACACGAACTGTTAGGGCCCTCAATAAAGTCGAGGCCTTTGCATTACGGGCCGAAGACCTCAAATTTGTAGCCAATCAATTTAGACGCCTCCATAGCAAGAAATTGCAGCATACTTTCCGGTTTTACTCCCACCATTGGAGGACATGGGCCGCGTGCTTTATTCAGGCGGCTTGGCGTAGGCATAAGAAGAAGATGGTGGCTAAGGATTTATTGGACCGGGAAACATCAGCAGTTGGTTCGGATTCTTCTCAACAAGTGAAGATGAATTTGGGGGTTACGATTCTGGCTTCGGGGTTTGCTGCTAACACTAGGAGAGGGGCCCAGAAGGCAAAAGATGAGATGCCTAAGTTGAGAAAGCCCGACGAGCCTGACTTTTCGGCTGAGGTTGATGAAGGGTAG 2121 43.89 MELKKEKLVRFYSDGKQQHDLAVVPEPLQLETSSSSSFLRSEYGLVVPERSIYSQTFRTGKLTIFPVDNLPWSTRILDPSSEIVLQWNWVFIVACLVALFVDPLYFYLPALEKDVNSSCVKIDSNLRIIVTCFRTLADIFYLLHMVIKFRTAYVAPSSRVFGRGELVMDPKKIACKYIRSDFFIDLIATLPLPQIVIWLIIPATRSSQMDHKNNALVLIVLFQYIPRLYLIFPLSAEIVKAAGFVTKTAWAGAAYNLLLFMLASHVLGAAWYLLSIDRYTSCLKSHCIKEESHPMKCLLSYLDCDTLGYTDRKLWVNATTVFNSCDPDTKHFKYGIFEKAMTKNVVSSNFVKKYFYCLWWGLQNLSSYGQNLSTSTFMGETLFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMRHRQLPEDLKQRVRCFVQYKWLATRGVDEETILNSLPADLRRDIQCHLCLNLVRRVPFFSQMDDQLLDAICERLVSSLSTEGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLTWALLPKSTINLPSSTRTVRALNKVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRHKKKMVAKDLLDRETSAVGSDSSQQVKMNLGVTILASGFAANTRRGAQKAKDEMPKLRKPDEPDFSAEVDEG 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5854955 5859855 + Conep16aG0271200.1 Cone16ag0355 454789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0355 706 ProSiteProfiles cAMP/cGMP binding motif profile. 485 568 IPR000595 -
Cone16ag0355 706 FunFam Cyclic nucleotide-gated ion channel 1 412 476 - -
Cone16ag0355 706 Pfam Ion transport protein 87 412 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone16ag0355 706 Pfam Cyclic nucleotide-binding domain 508 597 IPR000595 -
Cone16ag0355 706 SUPERFAMILY cAMP-binding domain-like 415 607 IPR018490 -
Cone16ag0355 706 Gene3D - 84 411 - -
Cone16ag0355 706 SUPERFAMILY Voltage-gated potassium channels 78 407 - -
Cone16ag0355 706 Gene3D Helix hairpin bin 413 476 - -
Cone16ag0355 706 PRINTS EAG/ELK/ERG potassium channel family signature 448 455 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone16ag0355 706 PRINTS EAG/ELK/ERG potassium channel family signature 380 391 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone16ag0355 706 PRINTS EAG/ELK/ERG potassium channel family signature 145 154 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone16ag0355 706 PRINTS EAG/ELK/ERG potassium channel family signature 262 272 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone16ag0355 706 PRINTS EAG/ELK/ERG potassium channel family signature 398 407 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone16ag0355 706 Gene3D Jelly Rolls 483 603 IPR014710 -
Cone16ag0355 706 CDD CAP_ED 485 616 IPR000595 -
Cone16ag0355 706 MobiDBLite consensus disorder prediction 680 699 - -
Cone16ag0355 706 SMART cnmp_10 485 616 IPR000595 -
Cone16ag0355 706 FunFam Cyclic nucleotide-gated ion channel 1 483 601 - -
Cone16ag0355 706 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 66 685 - -
Cone16ag0355 706 MobiDBLite consensus disorder prediction 677 706 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0123 Cone-Chr11:551157 Cone16ag0355 Cone-Chr16:5854955 7.33E-116 dispersed
Cone13ag0132 Cone-Chr13:761986 Cone16ag0355 Cone-Chr16:5854955 3.64E-277 dispersed
Cone16ag0355 Cone-Chr16:5854955 Cone17ag1085 Cone-Chr17:8084335 0 dispersed
Cone16ag0355 Cone-Chr16:5854955 Cone2ag0610 Cone-Chr2:3700486 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0355 K27629 - csv:101218643 1099.35