Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0356 ATGTTGATAACGGTTGGAGAAGCTGCCGCAGCTTCTTCTTCTTCATCGCTCTGCTTCTTCAACCACTCGACAGTTCCACCTCTCAGTCGAAATCTTCGTACAAGACCTAGAAATCCAATCTGCAGAGCCACCTTCTCTGTCCAACCAAAAAAATCATGGAATCTCGGCCTCATCTCCAACAGTTGTGAGGCCTCAACCTTTGATCCCTTAGGTATCGATTCAAATGCATCTTCCAGTCTAAGTTCTACTTTGGAAGGTTTTGTCAATTTATTTTCAGAAACATTCAGTAGTTCTACCGGTACAAAACGGGATAATTCCTCTTCAGCTAGAGGAGTGGCAGCTGCAATAGAAGACAGTTCTATTGATTTTGGGGATTTTTTCAAGGGTCCATTACCCGGAAAGTTCCTTAAGCTTTTGGGTTATCTGGTATTATCCAGGCTAGGAATATATGTACCTCTTGGTGGGGTAAATAGAGAGGCTTTTACTGGAAATTTGGATCAGAACAGTTTGTTGAGCACTTTGGATTCGTTTTCTGGAGGGGGAATTGGTAGACTAGGAATATGTTCTCTTGGTATTGTTCCGTTCATCAATGCCCAAATTGTTTTCCAGCTTCTAGCACAGATATATCCTAAGCTTCAAGAGCTTCAGAAAAGAGAAGGTGAAGCTGGAAGGAAAAAGATTCTGCAGTATACTAGATACTCGTCGGTTGGGTTTGCCATTGTACAGGCAATTGGTCAAGTACTTTACCTTCGTCCCTATGTTGATGACTTCAGTACACAATGGGTGCTCTCTTCCGTGACCTTATTGACACTTGGATCAGTACTTACAACATACATAGGGGAAAGAATCTCAGACCTAAAACTTGGAAATGGGACATCTCTTTTGATCTTCACAAGCATCATTTCCTATCTTCCAGCATCTTTTGGTAGGACAACAGCACAGGCATTCCAGGATGGTAATTACATTGGACTTGCTGCTACAATTACCTCCTTTGTTCTGTTGGTCCTCAGTATTGTATATGTTCAGGAAGCAGAAAGGAAAATTCCAATTAACTATGCCTCAAGATATGCTAGCAGAAGTGGAGGGCCTCAGAAATCTGCTTACTTACCGTTTAAGGTGAACAGTTCTGGAGTTATGCCTATCATATTTTCAACGTCAACATTAGCTCTTCCCGGTACTGTAGCACGCTTCACGGGCTTAGCTGCTTTGAAGAAAGCAGCACTTGCTTTAAATCCAGGCGGCTCTCTTTATCTGCCCACCAATATCCTTTTAATTGCGTTCTTCAACTACTACTACACTTTCCTCCAGTTGGACCCAGATGATGTAAGTGAACAATTGAAGCGCCAAGGTGCATCCATTCCACTTGTCCGCCCTGGAAAAAGTACTGCCGCCTATATCAAGACGGTACTAAGTCGAATATCAGTTCTCGGTTCAGGCTTCTTGGCAATCCTTGCTGCGGGTCCTTCTGTGATCGAGCAAACTACACACCTGACTGCATTCCGAGGATTTGCTGGGACATCTGTTCTTATTCTAGTTGGTTGCGCTACAGACACTGCAAGAAAAGTACAAGCTGAGATAATTTCTCAGAAATACAAGAATATAGAGTTCTATGATATTGATAAGTATGGTCCATGA 1635 42.63 MLITVGEAAAASSSSSLCFFNHSTVPPLSRNLRTRPRNPICRATFSVQPKKSWNLGLISNSCEASTFDPLGIDSNASSSLSSTLEGFVNLFSETFSSSTGTKRDNSSSARGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGYLVLSRLGIYVPLGGVNREAFTGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQIYPKLQELQKREGEAGRKKILQYTRYSSVGFAIVQAIGQVLYLRPYVDDFSTQWVLSSVTLLTLGSVLTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTTAQAFQDGNYIGLAATITSFVLLVLSIVYVQEAERKIPINYASRYASRSGGPQKSAYLPFKVNSSGVMPIIFSTSTLALPGTVARFTGLAALKKAALALNPGGSLYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAYIKTVLSRISVLGSGFLAILAAGPSVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDKYGP 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5860872 5865388 - Conep16aG0271300.1 Cone16ag0356 454790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0356 544 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 126 534 IPR002208 GO:0005048(PANTHER)|GO:0006616(PANTHER)|GO:0008320(PANTHER)|GO:0009535(PANTHER)|GO:0015031(InterPro)|GO:0016020(InterPro)
Cone16ag0356 544 ProSitePatterns Protein secY signature 2. 278 295 IPR030659 -
Cone16ag0356 544 NCBIfam preprotein translocase subunit SecY 134 531 IPR002208 GO:0015031(InterPro)|GO:0016020(InterPro)
Cone16ag0356 544 Pfam SecY 187 518 IPR002208 GO:0015031(InterPro)|GO:0016020(InterPro)
Cone16ag0356 544 SUPERFAMILY Preprotein translocase SecY subunit 127 525 IPR023201 -
Cone16ag0356 544 Hamap Protein translocase subunit SecY [secY]. 123 535 IPR026593 -
Cone16ag0356 544 Gene3D SecY subunit domain 126 531 IPR023201 -
Cone16ag0356 544 PRINTS Preprotein translocase SecY subunit signature 470 488 - -
Cone16ag0356 544 PRINTS Preprotein translocase SecY subunit signature 227 250 - -
Cone16ag0356 544 PRINTS Preprotein translocase SecY subunit signature 259 284 - -
Cone16ag0356 544 PRINTS Preprotein translocase SecY subunit signature 415 437 - -
Cone16ag0356 544 PRINTS Preprotein translocase SecY subunit signature 504 522 - -
Cone16ag0356 544 PRINTS Preprotein translocase SecY subunit signature 185 205 - -
Cone16ag0356 544 PRINTS Preprotein translocase SecY subunit signature 285 308 - -
Cone16ag0356 544 PRINTS Preprotein translocase SecY subunit signature 135 153 - -
Cone16ag0356 544 PRINTS Preprotein translocase SecY subunit signature 376 395 - -
Cone16ag0356 544 ProSitePatterns Protein secY signature 1. 186 205 IPR030659 -
Cone16ag0356 544 FunFam Preprotein translocase subunit SECY, chloroplastic 126 531 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0356 Cone-Chr16:5860872 Cone2ag0611 Cone-Chr2:3709325 3.50E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0356 K10956 - csv:101222431 836.639