Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0422 ATGTCCGACGGAGAAAGGGACGGTAGATCCAGTTTACTCCACGGCAAGTACGAACTTGGTAGGCTTCTTGGCCATGGAACCTTCGCGAAGGTCTATCATGCTAGAAACTTACAGACAGGCAAAAACGTCGCCATGAAAGTCGTTGGGAAAGAGAAGGTGATAAAGGTCGGAATGATGGAGCAGGTCAAGCGAGAAATCTCCGTCATGAAGATGGTGAAGCATCCGAACATCGTAGAACTCCATGAAGTCATGGCGAGTAAGTCGAAGATCTACTTCGCGATGGAGCTGGTCAGAGGCGGTGAGCTCTTCTCCAAAATAGCGAAAGGCCGATTGAAAGAAGACCTAGCTAGAGTCTATTTCCAGCAATTGATCTCAGCCATCGATTTCTGTCACAGCCGTGGAGTCTACCACCGTGATTTGAAACCGGAAAATCTCCTCCTTGACGAAGAAGGTAATCTTAAGGTAACTGATTTTGGCCTCACTGCGTTTTCAGAGCATTTGAAACAAGACGGGTTATTACACACTACGTGTGGAACGCCTGCTTATGTTGCACCTGAGGTGATTGGAAAAAAAGGTTATGATGGTGCAAAAGCTGATCTTTGGTCTTGTGGTGTAATCCTGTATGTGCTTCTTGCTGGTTTTCTTCCCTTTCAGGAAGATAATTTAGTAGCCATGTATAGAAAGATTTACAGGGGAGACTTTAAATGCCCACCATGGTTCTCTTCCGAGTCTCGCAGACTAATCACCAAGCTTCTTGATCCAAATCCAAATACCCGGATTTCAATTTCGAAAATCATGGACTCCTTATGGTTTAAGAAATCCATTCTGAAAACCACAAGTACAAAAGATGAGCAAGAATTGGTTGAAAGTTCCGAGAAACTGATGTTGAAGCAGCCTGAGACTCTAAATGCTTTCCATATAATCTCTTTATCGGAAGGGTTCGATTTATCGCCCTTGTTTGAGGAGAATAAGAGGGAAGAGAAGGAAGAGATGAGATTTGCGACCATGAGGCCAGCGAGTAGTGTGATGTCTAAGCTTGAAGACGTTGGCAAGGCTGGGAAGTTTGATGTGAAGAAGAGCGAGTCTAGAGTGCAATTGCAAGGGCAGGAGAGAGGTAGGAAAGGGAAGTTGGCTATTGGGGTGGAGATTTTCGCCCTAACGCCGTCTTTTCTGGTGGTGGAGGTGAAGAAGGACCATGGTGATACTTTGGAGTATAATCGGTTCTGTAGCAAAGAGCTTAGACCTGCCCTGAAAGACATTGCCTGGACTTGTCCTGCTGGTAATACCATGCCTGCTGTTTGA 1302 45.47 MSDGERDGRSSLLHGKYELGRLLGHGTFAKVYHARNLQTGKNVAMKVVGKEKVIKVGMMEQVKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKIAKGRLKEDLARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEEGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYDGAKADLWSCGVILYVLLAGFLPFQEDNLVAMYRKIYRGDFKCPPWFSSESRRLITKLLDPNPNTRISISKIMDSLWFKKSILKTTSTKDEQELVESSEKLMLKQPETLNAFHIISLSEGFDLSPLFEENKREEKEEMRFATMRPASSVMSKLEDVGKAGKFDVKKSESRVQLQGQERGRKGKLAIGVEIFALTPSFLVVEVKKDHGDTLEYNRFCSKELRPALKDIAWTCPAGNTMPAV 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6591522 6593552 + Conep16aG0278000.1 Cone16ag0422 454856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0422 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0422 433 SUPERFAMILY Protein kinase-like (PK-like) 14 287 IPR011009 -
Cone16ag0422 433 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 417 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone16ag0422 433 Pfam NAF domain 299 359 IPR004041 GO:0007165(InterPro)
Cone16ag0422 433 Gene3D Transferase(Phosphotransferase) domain 1 99 277 - -
Cone16ag0422 433 CDD STKc_SnRK3 16 270 - -
Cone16ag0422 433 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Cone16ag0422 433 FunFam Non-specific serine/threonine protein kinase 7 297 - -
Cone16ag0422 433 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524(InterPro)
Cone16ag0422 433 CDD CIPK_C 303 418 - -
Cone16ag0422 433 SMART serkin_6 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0422 433 ProSiteProfiles NAF domain profile. 297 321 IPR018451 GO:0007165(InterPro)
Cone16ag0422 433 Gene3D Kinase associated domain 1, KA1 297 423 - -
Cone16ag0422 433 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0422 433 FunFam Non-specific serine/threonine protein kinase 9 96 - -
Cone16ag0422 433 FunFam Non-specific serine/threonine protein kinase 297 422 - -
Cone16ag0422 433 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0422 Cone-Chr16:6591522 Cone3ag0468 Cone-Chr3:2270645 2.49E-179 dispersed
Cone16ag0422 Cone-Chr16:6591522 Cone2ag0573 Cone-Chr2:3318429 1.10E-295 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82206 PF00573 Ribosomal_L4 1.60E-40 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0422 - - - 0.0