Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone16ag0423 | ATGCAGCCACTCTGTAGCAGAGAAATCCAAGGAATGAACTCTCTCTTAAACCACTTCGATCCAACCTCCTCTCATGACGACTTCCTCGATCAGATCCTCTCCACCGTTCCTTCCTCCTCTTCTTCCTCCTGGCCGCTAGACCTCTCCGACGAAACAACGCCGCCGTCTAACCCCTACGATAGTCTCAACCTTCCCTACCACTTCGACGACAATTCATCATTAGTTGGCTCCACCTTAGCCTCCAAGCTCCGTTCACACCACATCACCGCTGACTCCCCCGCCGCCAAGGCTGCCGCCGCGATGATGCTTCAACACCAGCTCTTATTGTCCAGAAGAGGCCTCGCCGTCACCGCCTCCGCCGGAGACGAAAGTTCCGGTCTTCCTCATCTGCCTTTATCTCCATCGTTTAAATCCTGCGCTACACCAGGTGGTCGTGACGGTTCGGGTCAAGCTCTCTACAACGGATTCGCCGGAGCGTTACACGTGTCCAGTCAAACTCCGAACCAACAACCGCAACACTTCCAAAATCCTCAGGCACAGCTCTTCCAATCATCTCCAGCAACAACGGCTATGAATCCAACTCCGCCAGGTGGTTCCCCCGGCGGTGGCAGCTCCGCGGCGGCGGCGCAGCCGCGACAGAGGGTCAGAGCTCGTCGTGGTGAAGCAACTGACCCACACAGCATTGCTGAACGATTACGGAGGGAGAGAATTGCAGAGAGAATGAAATCACTGCAAGAACTAGTCCCTAACGCCAACAAGACGGACAAGGCTTCAATGCTAGATGAAATAATTGATTATGTGAAATTTCTCCAGCTTCAAGTCAAGGTTCTTAGCATGAGCAGGTTGGGCAGTGCTTCTGCTGCTACTGCTCTTCGTGTTACTGATCAGGGTAGCGGCGACTGTATCCAAACAAGTGCCGGCGGTAGGGCCAGTGAAAGACGACCGGGCACTAACGGAACGAATACAACGTCTTCTTCTAACGAGACGATGACGATGACGATGACGGAGCATCAAGTGGCGAAGCTAATGGAGGAAGACATGGGGTCCGCCATGCAGTATTTGCAAGGAAAGGGTCTATGCCTCATGCCGATCTCACTCGCCACGGCTATCTCGACCGCCACGTGTCACTCCAGGAACCCTATGATCATGAACCCTCCGAGCAATAACCACCATCACCCGATGATCATGCCATCATCCAACGGTAATGAAGGTCCTTCCTCGTCCAGCACATCCGTCCTCACCGCCCAATCTGCTGCCAATATTAATATTGCCAACGGCGTTGGCGATGGCGCCGTTAAAGATGCCCCTTCCGTTTCCAAGCCGTGA | 1326 | 54.0 | MQPLCSREIQGMNSLLNHFDPTSSHDDFLDQILSTVPSSSSSSWPLDLSDETTPPSNPYDSLNLPYHFDDNSSLVGSTLASKLRSHHITADSPAAKAAAAMMLQHQLLLSRRGLAVTASAGDESSGLPHLPLSPSFKSCATPGGRDGSGQALYNGFAGALHVSSQTPNQQPQHFQNPQAQLFQSSPATTAMNPTPPGGSPGGGSSAAAAQPRQRVRARRGEATDPHSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGSASAATALRVTDQGSGDCIQTSAGGRASERRPGTNGTNTTSSSNETMTMTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPMIMNPPSNNHHHPMIMPSSNGNEGPSSSSTSVLTAQSAANINIANGVGDGAVKDAPSVSKP | 441 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 6617797 | 6620574 | - | Conep16aG0278100.1 | Cone16ag0423 | 454857 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone16ag0423 | 441 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 41 | 369 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Cone16ag0423 | 441 | MobiDBLite | consensus disorder prediction | 214 | 229 | - | - | |
Cone16ag0423 | 441 | FunFam | Transcription factor bHLH66 | 218 | 283 | - | - | |
Cone16ag0423 | 441 | SMART | finulus | 227 | 276 | IPR011598 | GO:0046983(InterPro) | |
Cone16ag0423 | 441 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 221 | 270 | IPR011598 | GO:0046983(InterPro) | |
Cone16ag0423 | 441 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 219 | 281 | IPR036638 | GO:0046983(InterPro) | |
Cone16ag0423 | 441 | Gene3D | - | 218 | 289 | IPR036638 | GO:0046983(InterPro) | |
Cone16ag0423 | 441 | MobiDBLite | consensus disorder prediction | 37 | 60 | - | - | |
Cone16ag0423 | 441 | MobiDBLite | consensus disorder prediction | 302 | 327 | - | - | |
Cone16ag0423 | 441 | Pfam | Helix-loop-helix DNA-binding domain | 226 | 271 | IPR011598 | GO:0046983(InterPro) | |
Cone16ag0423 | 441 | MobiDBLite | consensus disorder prediction | 186 | 229 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag0905 | Cone-Chr11:7435566 | Cone16ag0423 | Cone-Chr16:6617797 | 5.57E-16 | dispersed | |
Cone16ag0423 | Cone-Chr16:6617797 | Cone7ag0587 | Cone-Chr7:2818945 | 5.08E-88 | dispersed | |
Cone16ag0423 | Cone-Chr16:6617797 | Cone2ag0572 | Cone-Chr2:3296185 | 1.84E-204 | wgd | |
Cone16ag0423 | Cone-Chr16:6617797 | Cone4ag0604 | Cone-Chr4:2769142 | 1.38E-87 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44941 | PF08648 | SNRNP27 | 2.30E-24 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone16ag0423 | - | - | - | 0.0 |