Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0423 ATGCAGCCACTCTGTAGCAGAGAAATCCAAGGAATGAACTCTCTCTTAAACCACTTCGATCCAACCTCCTCTCATGACGACTTCCTCGATCAGATCCTCTCCACCGTTCCTTCCTCCTCTTCTTCCTCCTGGCCGCTAGACCTCTCCGACGAAACAACGCCGCCGTCTAACCCCTACGATAGTCTCAACCTTCCCTACCACTTCGACGACAATTCATCATTAGTTGGCTCCACCTTAGCCTCCAAGCTCCGTTCACACCACATCACCGCTGACTCCCCCGCCGCCAAGGCTGCCGCCGCGATGATGCTTCAACACCAGCTCTTATTGTCCAGAAGAGGCCTCGCCGTCACCGCCTCCGCCGGAGACGAAAGTTCCGGTCTTCCTCATCTGCCTTTATCTCCATCGTTTAAATCCTGCGCTACACCAGGTGGTCGTGACGGTTCGGGTCAAGCTCTCTACAACGGATTCGCCGGAGCGTTACACGTGTCCAGTCAAACTCCGAACCAACAACCGCAACACTTCCAAAATCCTCAGGCACAGCTCTTCCAATCATCTCCAGCAACAACGGCTATGAATCCAACTCCGCCAGGTGGTTCCCCCGGCGGTGGCAGCTCCGCGGCGGCGGCGCAGCCGCGACAGAGGGTCAGAGCTCGTCGTGGTGAAGCAACTGACCCACACAGCATTGCTGAACGATTACGGAGGGAGAGAATTGCAGAGAGAATGAAATCACTGCAAGAACTAGTCCCTAACGCCAACAAGACGGACAAGGCTTCAATGCTAGATGAAATAATTGATTATGTGAAATTTCTCCAGCTTCAAGTCAAGGTTCTTAGCATGAGCAGGTTGGGCAGTGCTTCTGCTGCTACTGCTCTTCGTGTTACTGATCAGGGTAGCGGCGACTGTATCCAAACAAGTGCCGGCGGTAGGGCCAGTGAAAGACGACCGGGCACTAACGGAACGAATACAACGTCTTCTTCTAACGAGACGATGACGATGACGATGACGGAGCATCAAGTGGCGAAGCTAATGGAGGAAGACATGGGGTCCGCCATGCAGTATTTGCAAGGAAAGGGTCTATGCCTCATGCCGATCTCACTCGCCACGGCTATCTCGACCGCCACGTGTCACTCCAGGAACCCTATGATCATGAACCCTCCGAGCAATAACCACCATCACCCGATGATCATGCCATCATCCAACGGTAATGAAGGTCCTTCCTCGTCCAGCACATCCGTCCTCACCGCCCAATCTGCTGCCAATATTAATATTGCCAACGGCGTTGGCGATGGCGCCGTTAAAGATGCCCCTTCCGTTTCCAAGCCGTGA 1326 54.0 MQPLCSREIQGMNSLLNHFDPTSSHDDFLDQILSTVPSSSSSSWPLDLSDETTPPSNPYDSLNLPYHFDDNSSLVGSTLASKLRSHHITADSPAAKAAAAMMLQHQLLLSRRGLAVTASAGDESSGLPHLPLSPSFKSCATPGGRDGSGQALYNGFAGALHVSSQTPNQQPQHFQNPQAQLFQSSPATTAMNPTPPGGSPGGGSSAAAAQPRQRVRARRGEATDPHSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGSASAATALRVTDQGSGDCIQTSAGGRASERRPGTNGTNTTSSSNETMTMTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPMIMNPPSNNHHHPMIMPSSNGNEGPSSSSTSVLTAQSAANINIANGVGDGAVKDAPSVSKP 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6617797 6620574 - Conep16aG0278100.1 Cone16ag0423 454857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0423 441 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 41 369 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone16ag0423 441 MobiDBLite consensus disorder prediction 214 229 - -
Cone16ag0423 441 FunFam Transcription factor bHLH66 218 283 - -
Cone16ag0423 441 SMART finulus 227 276 IPR011598 GO:0046983(InterPro)
Cone16ag0423 441 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 221 270 IPR011598 GO:0046983(InterPro)
Cone16ag0423 441 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 219 281 IPR036638 GO:0046983(InterPro)
Cone16ag0423 441 Gene3D - 218 289 IPR036638 GO:0046983(InterPro)
Cone16ag0423 441 MobiDBLite consensus disorder prediction 37 60 - -
Cone16ag0423 441 MobiDBLite consensus disorder prediction 302 327 - -
Cone16ag0423 441 Pfam Helix-loop-helix DNA-binding domain 226 271 IPR011598 GO:0046983(InterPro)
Cone16ag0423 441 MobiDBLite consensus disorder prediction 186 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0905 Cone-Chr11:7435566 Cone16ag0423 Cone-Chr16:6617797 5.57E-16 dispersed
Cone16ag0423 Cone-Chr16:6617797 Cone7ag0587 Cone-Chr7:2818945 5.08E-88 dispersed
Cone16ag0423 Cone-Chr16:6617797 Cone2ag0572 Cone-Chr2:3296185 1.84E-204 wgd
Cone16ag0423 Cone-Chr16:6617797 Cone4ag0604 Cone-Chr4:2769142 1.38E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44941 PF08648 SNRNP27 2.30E-24 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0423 - - - 0.0