Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0433 ATGTATCTAATGGAACCAGAGCAGGTCGGTGAAGAAATTGCAGACCTTCAAAACGACTCAGTTAAGCAGCCATGGCCTCTTTACGGTGAAGTTCATCACACCCAGATGGATAACTGCGACCGGGTCAGCGCCGACAATTCTCTTCCTCTTGAAAGCATTGCAGAGGATGCCACAGTTGTAGAAAGAAAACAAGGGTTTAGTTTCATCCCTGCCCTTCGATCAGGAGAATGGTCAGATATTGGCAGCCGGTCGTACATGGAGGACACTCATACATGCATCAACGACTTGGCTAAGAAGTTCGGTTATAATAACATTCTTGATGATGAAGAAACTATCTCCTTCTATGGTGTATTTGATGGTCATGGAGGAAAGGCGGCTGCCCAGTATGTCCGTGACAACTTGCCAAGAGTCATTGTTGAAGATGCCGACTTTCCTGTAGAGCTGGAGAAGGTGGTTATTAGGTCTTTTAGGGAGACTGATTCTGCATTTGCAAAGACATGTTCCAAGGAGTCTTCTCTCTCGTCTGGCACTACAGCCCTCACTGCTATGATATTCGGGAGGTCATTACTTGTAGCAAATGCTGGAGATTGTCGAGCCGTATTATCCCGTTGTGGAAAGGCCATAGAAATGTCAAAAGACCATAGGCCTGAATGCACAAAAGAAAGGATCCGAATTGAGGCACTAGGGGGATACATTGACGATGGCTACCTAAACGGCCAGTTAGGTGTGACCCGGGCAATAGGGGATTGGCATTTAGAAGGCATGAAGGAAATGAGCGAACCGGGGGGCCCACTAACCTCCGAACCGGAGCTAAAACTGATAACATTAACCAAGGACGACGAGTTCTTGATCATTGGAAGTGACGGGATATGGGATGTCTTCACGAGTCAAAATTCAGTTGACTTTGCTCGGAGAAGACTCCAAGAGCACAATGATGTCAAACTTTGTTGCAAGCAAATAGTAGAGGAAGCGATAAAGAGAGGGGCAACTGATAATCTGACAGCCGTTGTTGTGAGCTTTCACTTGGATCCACCGCCACAAGTGGTGGTTCAGAGGGCCAGGGTTCACCGGAGCATTTCGGCCGAGGGGCTTCACAACCTTAAGTGCATCTTGGAAGGGTGA 1122 47.5 MYLMEPEQVGEEIADLQNDSVKQPWPLYGEVHHTQMDNCDRVSADNSLPLESIAEDATVVERKQGFSFIPALRSGEWSDIGSRSYMEDTHTCINDLAKKFGYNNILDDEETISFYGVFDGHGGKAAAQYVRDNLPRVIVEDADFPVELEKVVIRSFRETDSAFAKTCSKESSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRCGKAIEMSKDHRPECTKERIRIEALGGYIDDGYLNGQLGVTRAIGDWHLEGMKEMSEPGGPLTSEPELKLITLTKDDEFLIIGSDGIWDVFTSQNSVDFARRRLQEHNDVKLCCKQIVEEAIKRGATDNLTAVVVSFHLDPPPQVVVQRARVHRSISAEGLHNLKCILEG 373
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 6701050 6704067 + Conep16aG0279100.1 Cone16ag0433 454867
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0433 373 SUPERFAMILY PP2C-like 64 341 IPR036457 -
Cone16ag0433 373 ProSiteProfiles PPM-type phosphatase domain profile. 73 340 IPR001932 -
Cone16ag0433 373 SMART PP2C_4 63 338 IPR001932 -
Cone16ag0433 373 Pfam Protein phosphatase 2C 82 332 IPR001932 -
Cone16ag0433 373 CDD PP2Cc 73 340 IPR001932 -
Cone16ag0433 373 Gene3D - 55 343 IPR036457 -
Cone16ag0433 373 PANTHER PROTEIN PHOSPHATASE 2C 71 340 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cone16ag0433 373 FunFam Probable protein phosphatase 2C 22 56 343 - -
Cone16ag0433 373 ProSitePatterns PPM-type phosphatase domain signature. 114 122 IPR000222 GO:0043169(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0433 Cone-Chr16:6701050 Cone20ag0656 Cone-Chr20:3995828 1.91E-126 dispersed
Cone16ag0433 Cone-Chr16:6701050 Cone17ag1044 Cone-Chr17:7876242 2.82E-128 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44943 PF00702 Hydrolase 1.60E-19 CL0137 Cone TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0433 K14803 - rcu:8275709 541.191