Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone16ag0433 | ATGTATCTAATGGAACCAGAGCAGGTCGGTGAAGAAATTGCAGACCTTCAAAACGACTCAGTTAAGCAGCCATGGCCTCTTTACGGTGAAGTTCATCACACCCAGATGGATAACTGCGACCGGGTCAGCGCCGACAATTCTCTTCCTCTTGAAAGCATTGCAGAGGATGCCACAGTTGTAGAAAGAAAACAAGGGTTTAGTTTCATCCCTGCCCTTCGATCAGGAGAATGGTCAGATATTGGCAGCCGGTCGTACATGGAGGACACTCATACATGCATCAACGACTTGGCTAAGAAGTTCGGTTATAATAACATTCTTGATGATGAAGAAACTATCTCCTTCTATGGTGTATTTGATGGTCATGGAGGAAAGGCGGCTGCCCAGTATGTCCGTGACAACTTGCCAAGAGTCATTGTTGAAGATGCCGACTTTCCTGTAGAGCTGGAGAAGGTGGTTATTAGGTCTTTTAGGGAGACTGATTCTGCATTTGCAAAGACATGTTCCAAGGAGTCTTCTCTCTCGTCTGGCACTACAGCCCTCACTGCTATGATATTCGGGAGGTCATTACTTGTAGCAAATGCTGGAGATTGTCGAGCCGTATTATCCCGTTGTGGAAAGGCCATAGAAATGTCAAAAGACCATAGGCCTGAATGCACAAAAGAAAGGATCCGAATTGAGGCACTAGGGGGATACATTGACGATGGCTACCTAAACGGCCAGTTAGGTGTGACCCGGGCAATAGGGGATTGGCATTTAGAAGGCATGAAGGAAATGAGCGAACCGGGGGGCCCACTAACCTCCGAACCGGAGCTAAAACTGATAACATTAACCAAGGACGACGAGTTCTTGATCATTGGAAGTGACGGGATATGGGATGTCTTCACGAGTCAAAATTCAGTTGACTTTGCTCGGAGAAGACTCCAAGAGCACAATGATGTCAAACTTTGTTGCAAGCAAATAGTAGAGGAAGCGATAAAGAGAGGGGCAACTGATAATCTGACAGCCGTTGTTGTGAGCTTTCACTTGGATCCACCGCCACAAGTGGTGGTTCAGAGGGCCAGGGTTCACCGGAGCATTTCGGCCGAGGGGCTTCACAACCTTAAGTGCATCTTGGAAGGGTGA | 1122 | 47.5 | MYLMEPEQVGEEIADLQNDSVKQPWPLYGEVHHTQMDNCDRVSADNSLPLESIAEDATVVERKQGFSFIPALRSGEWSDIGSRSYMEDTHTCINDLAKKFGYNNILDDEETISFYGVFDGHGGKAAAQYVRDNLPRVIVEDADFPVELEKVVIRSFRETDSAFAKTCSKESSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRCGKAIEMSKDHRPECTKERIRIEALGGYIDDGYLNGQLGVTRAIGDWHLEGMKEMSEPGGPLTSEPELKLITLTKDDEFLIIGSDGIWDVFTSQNSVDFARRRLQEHNDVKLCCKQIVEEAIKRGATDNLTAVVVSFHLDPPPQVVVQRARVHRSISAEGLHNLKCILEG | 373 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 6701050 | 6704067 | + | Conep16aG0279100.1 | Cone16ag0433 | 454867 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone16ag0433 | 373 | SUPERFAMILY | PP2C-like | 64 | 341 | IPR036457 | - | |
| Cone16ag0433 | 373 | ProSiteProfiles | PPM-type phosphatase domain profile. | 73 | 340 | IPR001932 | - | |
| Cone16ag0433 | 373 | SMART | PP2C_4 | 63 | 338 | IPR001932 | - | |
| Cone16ag0433 | 373 | Pfam | Protein phosphatase 2C | 82 | 332 | IPR001932 | - | |
| Cone16ag0433 | 373 | CDD | PP2Cc | 73 | 340 | IPR001932 | - | |
| Cone16ag0433 | 373 | Gene3D | - | 55 | 343 | IPR036457 | - | |
| Cone16ag0433 | 373 | PANTHER | PROTEIN PHOSPHATASE 2C | 71 | 340 | IPR015655 | GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER) | |
| Cone16ag0433 | 373 | FunFam | Probable protein phosphatase 2C 22 | 56 | 343 | - | - | |
| Cone16ag0433 | 373 | ProSitePatterns | PPM-type phosphatase domain signature. | 114 | 122 | IPR000222 | GO:0043169(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone16ag0433 | Cone-Chr16:6701050 | Cone20ag0656 | Cone-Chr20:3995828 | 1.91E-126 | dispersed | |
| Cone16ag0433 | Cone-Chr16:6701050 | Cone17ag1044 | Cone-Chr17:7876242 | 2.82E-128 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 44943 | PF00702 | Hydrolase | 1.60E-19 | CL0137 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone16ag0433 | K14803 | - | rcu:8275709 | 541.191 |