Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0446 ATGTCGGGTTGGGACGAAGGGGCGATTCACTACAGCGATCAGGCACAGTCGCTCGGAGATGGTCCACCGGAAACTGCCGGTTCGCACCACGCTGTCCTCCGCAAGTTCAAGGAGTTCATCAGAGGCTTTGAAACGGATAAAAATGTCTTCCCGTACAGAGAAAGCCTCCTCCATAACCCTAAGTATCTTCGTATTGACATGGAAGACCTCGATGCCTTCGATGCTGATCTTCCAGCCAAGCTCCGTTCTTCTCCCGCCGATTACTTACCCCTGTTTGAGACTGCGGCAGCGGAGGTTTTGGTCAATTTGAAGACAAAAGTGGCTGGAGATACTGGAGAGATGGTGGAATCGGTGCCTGGAGATGTTCAGATTCTGCTGATTTCGAAGGAGGATCCTGTATCCATACGCTCTCTCGGGGCACAATACATTTCCAAACTCGTGAAAATTGGCGGTATAACTATAGCTGCTTCAAGAACTAAGGCAAAGGCAACATATGTGACCTTGCTCTGTAAGAACTGTAGAGGGACCCAGAGAGTTCCATGTCGGCCTGGACTTGGGGGTGCAATTGTTCCCCGAACTTGTAACCATGTTCCCCAGGTAGGAGAGGAATCGTGCCCATTGGATCCATGGATCGTGGTTCCCGACAGGTCTACTTATGTAGATCAACAAACTTTGAAGCTGCAAGAGAACCCTGAGGATGTTCCAACCGGAGAAATTCCTAGGAACATGCTTCTGTCAGTGGATCGCCATCTTGTACAAACAATTGTACCAGGCACAAGATTGACCATCATAGGGATTTACAGTATCTTTCAGTCTGCCAATTCTTCCGCATCCAACAAAGGTGCAGTTGCAATTAGACAACCTTATATAAGGGTTGTAGGAATAGAAGATCCAAGTGAGGGGAACACTCGAGGTCCTGCTTCTTTTACCCAAGATGAAATAGAAGAGTTCAAAAAATTTGCTGCAGAGCCTGATGCATATAAACGCATATGTTCCAAGATTGCTCCCTCTATATTTGGCCATGATGATGTGAAGAAGGCTGTGGCCTGTCTTTTGTTTGGAGGATCAAAGAAGAATTTGCCAGATGGTGTGAGGTTAAGAGGTGATATCAATGTGTTGCTTTTGGGGGACCCATCTACGGCAAAGTCTCAGTTTCTCAAGTTTGCTGAAAAAACAGCCCCTATAGCTGTGTACACTTCTGGGAAAGGCTCATCAGCTGCTGGCCTTACTGCTTCTGTGATCCAAGATAGTAGCTCTCGGGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGCAGATGGTGGTGTTGTTTGCATAGATGAGTTTGACAAAATGAGACCAGAGGATAGGGTCGCTATTCATGAAGCCATGGAACAACAGACCATATCCATTGCAAAAGCAGGAATAACGACAGTTCTTAATTCCAGAACCTCAGTCCTTGCCGCTGCTAACCCTCCATCAGGGCGCTATGATGATCTTAAGACTGCACAGGATAACATTGATTTGCAGACAACAATTCTTTCTCGATTTGATTTAATCTTTATTGTCAAAGATATCAGGATGTACAGTCAGGACATGACTATAGCTAACCATGTAATAAAACTCCATGCATCTGGTGAAGCAACCCCAGTTGATACTCGAGTATCTAAAGAAGAAAATTGGCTGAAAAGGTATCTGCAGTATTGTCGAACTGAATGTCATCCCCGTTTGACAGAATCTGCAGCCACAATGCTGCTGAATAACTATGTGAAAATCAGACAGGACATGAGGCAGCAGGCAAATGAAACTGGGGAATCCATGGTGATACCAATTACTGTAAGGCAGCTGGAAGCTATTATAAGGTTGAGTGAGGCACTTGCAAAAATGAAACTATCACACATAGCTACTGAGGCAGATGTAAAGGAGGCTATAGCCCTTTTCGAAGTGTCCACAGGGGATGCAGCAAGGTCCGGTATAAACCAGCAAGTCAATCTTACTGGTGAGATGGCAAATGAGATAAAGAAAGCAGAAACTCAGATAAAGAGAAGAGTAGGGATCAGCAGCCACATATCTGAGAGAAAGCTCATTGACGAGCTAACCAGAATGGGAATCAACGAATCTATCGTTAGGAGAGCTCTTATAATTATGCACCAAAGAGATGAAGTTGAATACAAGAGAGGAAAGCGTCTCATTTTCAGGAAAGCGTGA 2187 45.13 MSGWDEGAIHYSDQAQSLGDGPPETAGSHHAVLRKFKEFIRGFETDKNVFPYRESLLHNPKYLRIDMEDLDAFDADLPAKLRSSPADYLPLFETAAAEVLVNLKTKVAGDTGEMVESVPGDVQILLISKEDPVSIRSLGAQYISKLVKIGGITIAASRTKAKATYVTLLCKNCRGTQRVPCRPGLGGAIVPRTCNHVPQVGEESCPLDPWIVVPDRSTYVDQQTLKLQENPEDVPTGEIPRNMLLSVDRHLVQTIVPGTRLTIIGIYSIFQSANSSASNKGAVAIRQPYIRVVGIEDPSEGNTRGPASFTQDEIEEFKKFAAEPDAYKRICSKIAPSIFGHDDVKKAVACLLFGGSKKNLPDGVRLRGDINVLLLGDPSTAKSQFLKFAEKTAPIAVYTSGKGSSAAGLTASVIQDSSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDMTIANHVIKLHASGEATPVDTRVSKEENWLKRYLQYCRTECHPRLTESAATMLLNNYVKIRQDMRQQANETGESMVIPITVRQLEAIIRLSEALAKMKLSHIATEADVKEAIALFEVSTGDAARSGINQQVNLTGEMANEIKKAETQIKRRVGISSHISERKLIDELTRMGINESIVRRALIIMHQRDEVEYKRGKRLIFRKA 728
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 6781760 6787112 + Conep16aG0280400.1 Cone16ag0446 454880
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0446 728 Gene3D - 162 220 - -
Cone16ag0446 728 FunFam DNA helicase 27 115 - -
Cone16ag0446 728 Pfam MCM5, C-terminal domain 668 726 IPR054125 -
Cone16ag0446 728 Pfam MCM OB domain 135 270 IPR033762 -
Cone16ag0446 728 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 28 711 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006270(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER)
Cone16ag0446 728 ProSitePatterns MCM family signature. 435 443 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Cone16ag0446 728 Pfam MCM P-loop domain 314 536 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone16ag0446 728 Pfam MCM N-terminal domain 34 103 IPR027925 -
Cone16ag0446 728 SUPERFAMILY Nucleic acid-binding proteins 35 292 IPR012340 -
Cone16ag0446 728 CDD MCM5 329 643 - -
Cone16ag0446 728 PRINTS Mini-chromosome maintenance (MCM) protein family signature 455 468 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone16ag0446 728 PRINTS Mini-chromosome maintenance (MCM) protein family signature 479 491 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone16ag0446 728 PRINTS Mini-chromosome maintenance (MCM) protein family signature 506 514 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone16ag0446 728 PRINTS Mini-chromosome maintenance (MCM) protein family signature 427 441 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone16ag0446 728 PRINTS Mini-chromosome maintenance (MCM) protein family signature 367 382 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone16ag0446 728 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 162 174 IPR008048 GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cone16ag0446 728 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 562 577 IPR008048 GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cone16ag0446 728 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 286 298 IPR008048 GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cone16ag0446 728 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 136 151 IPR008048 GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cone16ag0446 728 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 638 655 IPR008048 GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cone16ag0446 728 FunFam DNA helicase 162 220 - -
Cone16ag0446 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 640 IPR027417 -
Cone16ag0446 728 Gene3D - 28 113 - -
Cone16ag0446 728 SMART mcm 131 645 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone16ag0446 728 FunFam DNA helicase 307 658 - -
Cone16ag0446 728 Gene3D - 135 270 IPR012340 -
Cone16ag0446 728 Pfam MCM AAA-lid domain 554 643 IPR041562 -
Cone16ag0446 728 Gene3D - 307 663 IPR027417 -
Cone16ag0446 728 ProSiteProfiles MCM family domain profile. 326 532 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0982 Cone-Chr12:8412224 Cone16ag0446 Cone-Chr16:6781760 4.30E-35 dispersed
Cone16ag0446 Cone-Chr16:6781760 Cone8ag1012 Cone-Chr8:9415074 1.66E-67 dispersed
Cone14ag0637 Cone-Chr14:3200945 Cone16ag0446 Cone-Chr16:6781760 8.61E-99 transposed
Cone19ag1277 Cone-Chr19:8691936 Cone16ag0446 Cone-Chr16:6781760 9.55E-73 transposed
Cone20ag0983 Cone-Chr20:6964190 Cone16ag0446 Cone-Chr16:6781760 1.48E-90 transposed
Cone3ag1220 Cone-Chr3:30947681 Cone16ag0446 Cone-Chr16:6781760 2.73E-105 transposed
Cone5ag1384 Cone-Chr5:8503744 Cone16ag0446 Cone-Chr16:6781760 7.08E-86 transposed
Cone9ag0904 Cone-Chr9:4438074 Cone16ag0446 Cone-Chr16:6781760 9.28E-93 transposed
Cone16ag0446 Cone-Chr16:6781760 Cone2ag0557 Cone-Chr2:3153268 1.28E-278 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0446 K02209 - csv:101211822 1245.72