Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone16ag0446 | ATGTCGGGTTGGGACGAAGGGGCGATTCACTACAGCGATCAGGCACAGTCGCTCGGAGATGGTCCACCGGAAACTGCCGGTTCGCACCACGCTGTCCTCCGCAAGTTCAAGGAGTTCATCAGAGGCTTTGAAACGGATAAAAATGTCTTCCCGTACAGAGAAAGCCTCCTCCATAACCCTAAGTATCTTCGTATTGACATGGAAGACCTCGATGCCTTCGATGCTGATCTTCCAGCCAAGCTCCGTTCTTCTCCCGCCGATTACTTACCCCTGTTTGAGACTGCGGCAGCGGAGGTTTTGGTCAATTTGAAGACAAAAGTGGCTGGAGATACTGGAGAGATGGTGGAATCGGTGCCTGGAGATGTTCAGATTCTGCTGATTTCGAAGGAGGATCCTGTATCCATACGCTCTCTCGGGGCACAATACATTTCCAAACTCGTGAAAATTGGCGGTATAACTATAGCTGCTTCAAGAACTAAGGCAAAGGCAACATATGTGACCTTGCTCTGTAAGAACTGTAGAGGGACCCAGAGAGTTCCATGTCGGCCTGGACTTGGGGGTGCAATTGTTCCCCGAACTTGTAACCATGTTCCCCAGGTAGGAGAGGAATCGTGCCCATTGGATCCATGGATCGTGGTTCCCGACAGGTCTACTTATGTAGATCAACAAACTTTGAAGCTGCAAGAGAACCCTGAGGATGTTCCAACCGGAGAAATTCCTAGGAACATGCTTCTGTCAGTGGATCGCCATCTTGTACAAACAATTGTACCAGGCACAAGATTGACCATCATAGGGATTTACAGTATCTTTCAGTCTGCCAATTCTTCCGCATCCAACAAAGGTGCAGTTGCAATTAGACAACCTTATATAAGGGTTGTAGGAATAGAAGATCCAAGTGAGGGGAACACTCGAGGTCCTGCTTCTTTTACCCAAGATGAAATAGAAGAGTTCAAAAAATTTGCTGCAGAGCCTGATGCATATAAACGCATATGTTCCAAGATTGCTCCCTCTATATTTGGCCATGATGATGTGAAGAAGGCTGTGGCCTGTCTTTTGTTTGGAGGATCAAAGAAGAATTTGCCAGATGGTGTGAGGTTAAGAGGTGATATCAATGTGTTGCTTTTGGGGGACCCATCTACGGCAAAGTCTCAGTTTCTCAAGTTTGCTGAAAAAACAGCCCCTATAGCTGTGTACACTTCTGGGAAAGGCTCATCAGCTGCTGGCCTTACTGCTTCTGTGATCCAAGATAGTAGCTCTCGGGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGCAGATGGTGGTGTTGTTTGCATAGATGAGTTTGACAAAATGAGACCAGAGGATAGGGTCGCTATTCATGAAGCCATGGAACAACAGACCATATCCATTGCAAAAGCAGGAATAACGACAGTTCTTAATTCCAGAACCTCAGTCCTTGCCGCTGCTAACCCTCCATCAGGGCGCTATGATGATCTTAAGACTGCACAGGATAACATTGATTTGCAGACAACAATTCTTTCTCGATTTGATTTAATCTTTATTGTCAAAGATATCAGGATGTACAGTCAGGACATGACTATAGCTAACCATGTAATAAAACTCCATGCATCTGGTGAAGCAACCCCAGTTGATACTCGAGTATCTAAAGAAGAAAATTGGCTGAAAAGGTATCTGCAGTATTGTCGAACTGAATGTCATCCCCGTTTGACAGAATCTGCAGCCACAATGCTGCTGAATAACTATGTGAAAATCAGACAGGACATGAGGCAGCAGGCAAATGAAACTGGGGAATCCATGGTGATACCAATTACTGTAAGGCAGCTGGAAGCTATTATAAGGTTGAGTGAGGCACTTGCAAAAATGAAACTATCACACATAGCTACTGAGGCAGATGTAAAGGAGGCTATAGCCCTTTTCGAAGTGTCCACAGGGGATGCAGCAAGGTCCGGTATAAACCAGCAAGTCAATCTTACTGGTGAGATGGCAAATGAGATAAAGAAAGCAGAAACTCAGATAAAGAGAAGAGTAGGGATCAGCAGCCACATATCTGAGAGAAAGCTCATTGACGAGCTAACCAGAATGGGAATCAACGAATCTATCGTTAGGAGAGCTCTTATAATTATGCACCAAAGAGATGAAGTTGAATACAAGAGAGGAAAGCGTCTCATTTTCAGGAAAGCGTGA | 2187 | 45.13 | MSGWDEGAIHYSDQAQSLGDGPPETAGSHHAVLRKFKEFIRGFETDKNVFPYRESLLHNPKYLRIDMEDLDAFDADLPAKLRSSPADYLPLFETAAAEVLVNLKTKVAGDTGEMVESVPGDVQILLISKEDPVSIRSLGAQYISKLVKIGGITIAASRTKAKATYVTLLCKNCRGTQRVPCRPGLGGAIVPRTCNHVPQVGEESCPLDPWIVVPDRSTYVDQQTLKLQENPEDVPTGEIPRNMLLSVDRHLVQTIVPGTRLTIIGIYSIFQSANSSASNKGAVAIRQPYIRVVGIEDPSEGNTRGPASFTQDEIEEFKKFAAEPDAYKRICSKIAPSIFGHDDVKKAVACLLFGGSKKNLPDGVRLRGDINVLLLGDPSTAKSQFLKFAEKTAPIAVYTSGKGSSAAGLTASVIQDSSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDMTIANHVIKLHASGEATPVDTRVSKEENWLKRYLQYCRTECHPRLTESAATMLLNNYVKIRQDMRQQANETGESMVIPITVRQLEAIIRLSEALAKMKLSHIATEADVKEAIALFEVSTGDAARSGINQQVNLTGEMANEIKKAETQIKRRVGISSHISERKLIDELTRMGINESIVRRALIIMHQRDEVEYKRGKRLIFRKA | 728 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 6781760 | 6787112 | + | Conep16aG0280400.1 | Cone16ag0446 | 454880 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone16ag0446 | 728 | Gene3D | - | 162 | 220 | - | - | |
| Cone16ag0446 | 728 | FunFam | DNA helicase | 27 | 115 | - | - | |
| Cone16ag0446 | 728 | Pfam | MCM5, C-terminal domain | 668 | 726 | IPR054125 | - | |
| Cone16ag0446 | 728 | Pfam | MCM OB domain | 135 | 270 | IPR033762 | - | |
| Cone16ag0446 | 728 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 28 | 711 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006270(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER) | |
| Cone16ag0446 | 728 | ProSitePatterns | MCM family signature. | 435 | 443 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Cone16ag0446 | 728 | Pfam | MCM P-loop domain | 314 | 536 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone16ag0446 | 728 | Pfam | MCM N-terminal domain | 34 | 103 | IPR027925 | - | |
| Cone16ag0446 | 728 | SUPERFAMILY | Nucleic acid-binding proteins | 35 | 292 | IPR012340 | - | |
| Cone16ag0446 | 728 | CDD | MCM5 | 329 | 643 | - | - | |
| Cone16ag0446 | 728 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 455 | 468 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone16ag0446 | 728 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 479 | 491 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone16ag0446 | 728 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 506 | 514 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone16ag0446 | 728 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 427 | 441 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone16ag0446 | 728 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 367 | 382 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone16ag0446 | 728 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 162 | 174 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone16ag0446 | 728 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 562 | 577 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone16ag0446 | 728 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 286 | 298 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone16ag0446 | 728 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 136 | 151 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone16ag0446 | 728 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 638 | 655 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone16ag0446 | 728 | FunFam | DNA helicase | 162 | 220 | - | - | |
| Cone16ag0446 | 728 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 336 | 640 | IPR027417 | - | |
| Cone16ag0446 | 728 | Gene3D | - | 28 | 113 | - | - | |
| Cone16ag0446 | 728 | SMART | mcm | 131 | 645 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone16ag0446 | 728 | FunFam | DNA helicase | 307 | 658 | - | - | |
| Cone16ag0446 | 728 | Gene3D | - | 135 | 270 | IPR012340 | - | |
| Cone16ag0446 | 728 | Pfam | MCM AAA-lid domain | 554 | 643 | IPR041562 | - | |
| Cone16ag0446 | 728 | Gene3D | - | 307 | 663 | IPR027417 | - | |
| Cone16ag0446 | 728 | ProSiteProfiles | MCM family domain profile. | 326 | 532 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag0982 | Cone-Chr12:8412224 | Cone16ag0446 | Cone-Chr16:6781760 | 4.30E-35 | dispersed | |
| Cone16ag0446 | Cone-Chr16:6781760 | Cone8ag1012 | Cone-Chr8:9415074 | 1.66E-67 | dispersed | |
| Cone14ag0637 | Cone-Chr14:3200945 | Cone16ag0446 | Cone-Chr16:6781760 | 8.61E-99 | transposed | |
| Cone19ag1277 | Cone-Chr19:8691936 | Cone16ag0446 | Cone-Chr16:6781760 | 9.55E-73 | transposed | |
| Cone20ag0983 | Cone-Chr20:6964190 | Cone16ag0446 | Cone-Chr16:6781760 | 1.48E-90 | transposed | |
| Cone3ag1220 | Cone-Chr3:30947681 | Cone16ag0446 | Cone-Chr16:6781760 | 2.73E-105 | transposed | |
| Cone5ag1384 | Cone-Chr5:8503744 | Cone16ag0446 | Cone-Chr16:6781760 | 7.08E-86 | transposed | |
| Cone9ag0904 | Cone-Chr9:4438074 | Cone16ag0446 | Cone-Chr16:6781760 | 9.28E-93 | transposed | |
| Cone16ag0446 | Cone-Chr16:6781760 | Cone2ag0557 | Cone-Chr2:3153268 | 1.28E-278 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone16ag0446 | K02209 | - | csv:101211822 | 1245.72 |