Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0459 ATGATTGTGGAGGACCAAATTGACCGATTTCCGGTCGGTATGAGAGTTCTTGCCGTTGACGACGACCCTACTTGCCTCAGAGTCTTAGAGTCTCTGCTTCGAAAATGCCAATATCACGTGACAATAACTAACCAGGCAGTTCAAGCCCTGAAAATGTTGAGGGAAAACCGAGACAAATTTGACTTAGTTATAAGCGATGTGAACATGCCGGATATGGACGGTTTTAATCTCCTCGAGCAAGTCGGCCTCGAAATGGACCTGCCGGTTATAATGTTATCAGCTCATAGCGATACAAAGCTTGTCATGAAGGGAATCACGCATGGTGCTGTAGATTATTTACTTAAACCGGTTAGGATTGAAGAGCTTAAGAACATATGGCAACACGTGTTAAGGAAAAAGAAGTTTGATCCGAAAGATCAAAACAAGTCACCAGATAAGAATAGGAGTGGCCACGGAGGAGTTAGTGGAGGAGGAGAAGGGTTTTCTTCTGTAGCGAACGAGGATAATGGAAAGGTCAATAGGAAGAGGAAGGACCAGAATGAAGATGAGGAAGAAGATGGTGATGAGAATGAACTTGAGAATGATGACCCGTCGAATCAGAAGAAGGCTCGGGTTGTTTGGTCGGTTGAGCTGCACCGGAAGTTTGTTGCAGCGGTTAATCAGTTGGGCCTTGAAAAAGCGGTTCCTAAGAAAATCCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAAAATGTCGCAAGCCATCTGCAGAAATATAGATTGTACCTAAAGAGAATTAGCATCGTAGCGACCCAACAAGCAAACATGGTTGCTGCGTTTGGGGGAAGTAAAGATGGATCATCATACATGCGATTAGGGTCACTTGACGGATTTGGATTCACCGGATCCGGTCCAAGAATTTCAAATTCTCCATTATCATCATCCTATGTGGGGTCCTACCCACCTTCCGGAATTCTCAATAGATTGAACTCCCCATCCGGGTCAAGCCTATGTGGTGGTATTATCCCTTCCCACGGACTTCTCCATCAGAATATTCCCCAGAACTTGAACAACTCCATCACCTCATATAATAAATTTCATTCTCCCATTTTGCCTTCAAACCAAAGCTCAAACATTTTCGAGGGGATTCCAACATCCTTGGAGCTCAACCCAGTTAATGATTCAATCCCGGGGTTTTCAATGTCCAACACTTTCAACCCGAACAATAATTCCATCTCTAGTGTTTCAACTAATCCTTTGCTTTTAAGAGCGAGCAATACAAGGACAATGCCATCTTCTCTTGGCAGTGGTTCGTCATCTAATCTAGTAAATAATGAAAGCTGGCAAGTTTCAGGGCCGATTCAACCGTCTTCAAGATTCCCTTCAAATGCTTACCCGTCTCTTAATAGTAATAATAATAGTCAATTGCCGTCAAATATTGGGAATAATAATACCATTCCAGTTGATTTCCCTTCTTCAAGTGCAGTAGTTTTAAACCCTCTACACAGCGCAAGAGGAGATGGGCAATGCCAAGAAGACTTGATCGGTAATGTTGTATTTAGTGCTGTAAATTCTATAAGCTCTATGGGCCCTTCTTCTATCAATAATCCTATTGTGGACCCTCTAAGCCAGAGTTTGGATCAAAATAATGGGATTGGGATCGGGATCAGCCCGTTAAATGGGTGCGTTCCGGCATTTGGTCAAAACAGTTTCGTCAAGAAATCTCCAGAAGAAACAATTATGGTTTCAAGTGGACCCAATCCCATGTATCAGACTAAGTCGCTGGATTTTTTCAGTCAAAGCAGTTACGGATCATTGGATGATATTATGAATTCTATGATTAAACGGGAAGAAATCGAACCAATACTAATGGACGGAGGAGAGCTAGGATTTGATGCTTACTCTCTTGGGTCTTGTATATGA 1905 42.57 MIVEDQIDRFPVGMRVLAVDDDPTCLRVLESLLRKCQYHVTITNQAVQALKMLRENRDKFDLVISDVNMPDMDGFNLLEQVGLEMDLPVIMLSAHSDTKLVMKGITHGAVDYLLKPVRIEELKNIWQHVLRKKKFDPKDQNKSPDKNRSGHGGVSGGGEGFSSVANEDNGKVNRKRKDQNEDEEEDGDENELENDDPSNQKKARVVWSVELHRKFVAAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISIVATQQANMVAAFGGSKDGSSYMRLGSLDGFGFTGSGPRISNSPLSSSYVGSYPPSGILNRLNSPSGSSLCGGIIPSHGLLHQNIPQNLNNSITSYNKFHSPILPSNQSSNIFEGIPTSLELNPVNDSIPGFSMSNTFNPNNNSISSVSTNPLLLRASNTRTMPSSLGSGSSSNLVNNESWQVSGPIQPSSRFPSNAYPSLNSNNNSQLPSNIGNNNTIPVDFPSSSAVVLNPLHSARGDGQCQEDLIGNVVFSAVNSISSMGPSSINNPIVDPLSQSLDQNNGIGIGISPLNGCVPAFGQNSFVKKSPEETIMVSSGPNPMYQTKSLDFFSQSSYGSLDDIMNSMIKREEIEPILMDGGELGFDAYSLGSCI 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6854189 6858213 + Conep16aG0281700.1 Cone16ag0459 454893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0459 634 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 258 IPR017930 -
Cone16ag0459 634 Gene3D - 13 151 - -
Cone16ag0459 634 MobiDBLite consensus disorder prediction 135 200 - -
Cone16ag0459 634 FunFam Two-component response regulator 198 261 - -
Cone16ag0459 634 NCBIfam myb-like DNA-binding domain, SHAQKYF class 202 255 IPR006447 GO:0003677(InterPro)
Cone16ag0459 634 PIRSF RR_ARR_type-B 2 634 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cone16ag0459 634 Pfam Response regulator receiver domain 16 124 IPR001789 GO:0000160(InterPro)
Cone16ag0459 634 Gene3D - 198 261 - -
Cone16ag0459 634 ProSiteProfiles Response regulatory domain profile. 15 130 IPR001789 GO:0000160(InterPro)
Cone16ag0459 634 SMART REC_2 14 126 IPR001789 GO:0000160(InterPro)
Cone16ag0459 634 SUPERFAMILY CheY-like 13 135 IPR011006 -
Cone16ag0459 634 SUPERFAMILY Homeodomain-like 200 259 IPR009057 -
Cone16ag0459 634 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 356 IPR045279 GO:0009736(InterPro)
Cone16ag0459 634 Pfam Myb-like DNA-binding domain 204 254 IPR001005 -
Cone16ag0459 634 CDD REC_typeB_ARR-like 16 130 - -
Cone16ag0459 634 MobiDBLite consensus disorder prediction 423 459 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0459 Cone-Chr16:6854189 Cone4ag1755 Cone-Chr4:12894931 4.60E-124 dispersed
Cone16ag0459 Cone-Chr16:6854189 Cone2ag0549 Cone-Chr2:3080122 0 wgd
Cone16ag0459 Cone-Chr16:6854189 Cone4ag0611 Cone-Chr4:2810489 3.66E-137 wgd
Cone16ag0459 Cone-Chr16:6854189 Cone7ag0579 Cone-Chr7:2779087 1.60E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44944 PF00628 PHD 7.70E-09 CL0390 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0459 K14491 - vvi:100259369 603.208