Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0476 ATGGAAGGATCATCAAGCAATCGTAATGTATCTGAAAGGGACATCTATTTACCGAACTATGAGTTTGGGAGGACTCTCGGGATCGGATCTTTCGGGAAAGTGAAAGTTGCTGTGCATAAGTTAACTGGTCACAGAGTTGCGGTTAAGATCCTTAACCGTGAAAAGATTAGGAGCTTGGAGATGGAAGATAAAGTCAAAAGAGAGATTAAGATCATGAGTCTGTTTATGCATCCTCACATTATAAGGCTCTATGAATTTATAGAGTCTCCTAATGATATTTATCTTGTCATGGAGTATCTGAATTCTGGTGAGCTCTTCGACTACATTATCGCAAAGGGAAAGTTGCCAGAAGACGAAGCTCGGCGCTTTTTCCAGCAGATAATTTCTGGGGTGGAGCACTGCCATAGGAACATGATTGCTCATAGAGACCTTAAGCCTGAAAACTTGCTCTTGGATTCAAAGCGGAACATCAAGATTGCTGATTTCGGTTTGAGCAATGTAATGTGTGATGGTCACTTTCTCAAGACTAGTTGTGGAAGTCCCAATTACGCTGCTCCTGAGGTTATTTCCGGAAAATTATACTCCGGGCAGGAAGTAGACATGTGGAGTTGCGGTGTTATTCTGTATACTATTCTTTGTGGGAACCTTCCTTTCGACAATGAAAATGTTCAACTCCTTTTTCAGAAGATCAAGGATGGAATTTATACACTTCCAAGTTATTTATCGTCCGGAGCAAGGGACTTGATTTCAAGGTTCCTTATGGTGGATCCCCTGAAGCGAATGGCCGTACCTCAGGTTAGGAAGCATCCGTGGTTCATGGCTCACCTCCCCCGCTATTTAGCTGTTCCCTCTCCCGACACTGCTCAACAAGCGAGAAAGATTGACGACGACATTCTTCAAGAAGTCATCAATATGGGATTTGCCAGACATCATCTGGTTGAATCTCTTTATATAAGAATCCAAAATGATGCTACTGTTGCATACTATCTGTTGGTAGACAACCATTTCCGGATTCATAATGGTAGTCTCGGAGCTGCATTTGTAGAAACCATTGAAACAGAAACGGGTTATGGCCAAATTATCCCAGAAGAAGTCTCTGCTGTTAGTCCCCATCACTCGATATTCATGGACTATCAAGGAATGGGCCTCCATCCTCACTTCCCGGTTGAACGGAAATGGGGTCTTGGGCTTCAGTCTCGAGCATGTTCAAGAGATTTAATGACGGAAGTTCTGAAAGCTATGAAAGAACTCAATGTTCGTTGGAAGAAGATCGAGAACTATAATGTCAAGTGTAAGTGGACTCCTCCTGTTCGATCTCATGGCATTTATGGCAATGTTATCAACGATAATATACCTCACATAGGGGATGATTGCACCACGTTTGAGCATGATCGGAGTTCGACATCGCCCCATTTAATGAAGTTTGAGGTTCAGCTTTTCAAAGAAAGGAACAAGTATCTCGTCGATCTGCAGTGTTTACAAGGGCCGCAGATGATGTTCTTGGAATTTGCTGCTTCTTTCCTCACTCAGCTCCGAGTTGTTTAA 1545 42.85 MEGSSSNRNVSERDIYLPNYEFGRTLGIGSFGKVKVAVHKLTGHRVAVKILNREKIRSLEMEDKVKREIKIMSLFMHPHIIRLYEFIESPNDIYLVMEYLNSGELFDYIIAKGKLPEDEARRFFQQIISGVEHCHRNMIAHRDLKPENLLLDSKRNIKIADFGLSNVMCDGHFLKTSCGSPNYAAPEVISGKLYSGQEVDMWSCGVILYTILCGNLPFDNENVQLLFQKIKDGIYTLPSYLSSGARDLISRFLMVDPLKRMAVPQVRKHPWFMAHLPRYLAVPSPDTAQQARKIDDDILQEVINMGFARHHLVESLYIRIQNDATVAYYLLVDNHFRIHNGSLGAAFVETIETETGYGQIIPEEVSAVSPHHSIFMDYQGMGLHPHFPVERKWGLGLQSRACSRDLMTEVLKAMKELNVRWKKIENYNVKCKWTPPVRSHGIYGNVINDNIPHIGDDCTTFEHDRSSTSPHLMKFEVQLFKERNKYLVDLQCLQGPQMMFLEFAASFLTQLRVV 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6943301 6945988 - Conep16aG0283400.1 Cone16ag0476 454910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0476 514 SUPERFAMILY KA1-like 329 513 IPR028375 -
Cone16ag0476 514 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 6 292 - GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cone16ag0476 514 SMART serkin_6 20 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0476 514 Gene3D Transferase(Phosphotransferase) domain 1 11 349 - -
Cone16ag0476 514 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 293 333 IPR015940 -
Cone16ag0476 514 Pfam Kinase associated domain 1 473 513 IPR001772 -
Cone16ag0476 514 SUPERFAMILY Protein kinase-like (PK-like) 17 273 IPR011009 -
Cone16ag0476 514 Pfam Protein kinase domain 20 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0476 514 Gene3D Kinase associated domain 1, KA1 396 512 - -
Cone16ag0476 514 FunFam Non-specific serine/threonine protein kinase 101 284 - -
Cone16ag0476 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0476 514 CDD AMPKA_C 390 511 - -
Cone16ag0476 514 FunFam Aurora kinase A 12 103 - -
Cone16ag0476 514 ProSiteProfiles Protein kinase domain profile. 20 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0476 514 CDD STKc_AMPK_alpha 17 272 - -
Cone16ag0476 514 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 466 513 IPR001772 -
Cone16ag0476 514 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524(InterPro)
Cone16ag0476 514 CDD UBA_SnRK1_plant 294 334 - -
Cone16ag0476 514 SMART uba_6 295 332 IPR015940 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0476 Cone-Chr16:6943301 Cone6ag1118 Cone-Chr6:7140717 1.22E-81 dispersed
Cone16ag0476 Cone-Chr16:6943301 Cone2ag0538 Cone-Chr2:2981490 3.53E-174 wgd
Cone16ag0476 Cone-Chr16:6943301 Cone4ag0522 Cone-Chr4:2338067 1.02E-241 wgd
Cone16ag0476 Cone-Chr16:6943301 Cone7ag0496 Cone-Chr7:2280931 4.89E-247 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82208 PF02431 Chalcone 1.90E-97 CL0560 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0476 K07198 - cit:102626026 703.745