Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0479 ATGGCGGATAATGATAAATCTTCAAGAGCTACAGGTCCGCCTCCACGGCCGACGATTATACTGCCGCCACGGCCTTCTATGGAGGCATTTTTTGGCGGCGGCGGCGGAGTAGGAGCTAGCCCTGGGCCTATGACTCTAGTCTCCAGCTTCTTCCCGGATAATTACGCCGACTCACCGGACTACCATCGGTCCTTCTCTCAGCTACTCGCCGGAGCTATTGGATCGCCGATGGCTATGGGATTCTTCAGCCCTAATGCGACAAATAATTCTTCCGCCAAGGAAGGAAATGAGTCTGATAAACAATTGGGGTTTAAACAGAGTAGGCCTATGAATTTGGTGGTTGCTCGATCCCCTATGTTCACTATCCCGCCGGGATTAAGCCCCTCTGGTTTGCTTAACTCGCCTGGGTTCTTCTCCCCTCAGAGTCCATTTGGAATTTCACACCAGCAAGCTTTAGCACAAGTTACGGCTCAAGCTGCGTTTGCTCATTCTCATATGCAAATGCATGAGCAAATGCAGCCGGAATATCAACCTTCATCAATATCATCTGCTAAGGAATCATCATCACCAAATCATAGTTCCTTTACATTTGATGACCAATCTCAGCCGTCAATCTTACCTTCCACGTCAGACCCAAAAAGCACTTTAATTGAATCAGCCGAGGCCGTTCAAACTGAAAGGAAATATCAACCTATTTCTCAGCCGTCCGATCGACCTACCAATGATGGGTACAATTGGAGGAAGTATGGACAGAAGCAGGTTAAGGGGAGTGAATTTCCGAGAAGTTATTACAAGTGTACACATCCGAGTTGTCCTGTTAAGAAGAAGGTGGAGAGGTCTCCTGATGGGCAGATAACTGAGATTATATACAAAGGCCAGCATAACCATGAAGCTCCGTCTAATAAACGGGGAAAAGATGGTAGTGAAGGGAATGGAAATATGAATTCTCAAAGCCAAATTGGGCATGTGAACAAGTCGAGTGAAGCTGCGCAAGTGGCTTCAAGTGATAGTGAAGAAATGGGAGAGACTGAGGTGAATGAAGATGGGGATGGGGATGAGCCTAATCCAAAGAGAAGGAATATAGAGGCTGGAACAACTGGGGTACCTTTGCCACATAAAACACTTACAGAACCGAAGATTGTTGTGCAAACGAGAAGTGAGGTTGACCTTTTAGACGATGGGTATAGGTGGCGCAAGTATGGACAGAAAGTGGTCAAAGGCAATCCTTATCCAAGGAGCTACTACAAATGCACTAGTGCTGGATGCAATGTCCGTAAGCACGTAGAAAGAGCTGCAACCGATGTGAAAGCTGTAATAACAACTTATGAAGGAAAACATAACCATGATGTCCCTGCAGCAAGAAACAGCGGCCACAATACAGCCAATAACAATCCAGCTCAGACAAAACCACATAAATTTCTGTCCCAGAAGCATCCTTTGTCTAAGGAAATGGATTTCGGAACAAACACCCAAAGAGCAGGCATTCTAAGGCTTAAGGAAGAACAACTCGAACGAAAAGGGAAACTCAAGAAGAGGCCTATGAGGAGGCAGATTAACCAATCTCCAAAAAAAAATGATAGTGGTGAGATTCAATATTTTTCTTCTGAGCATATCATTGCGAATATTCATTCAATACAAGCAAACTGA 1647 45.23 MADNDKSSRATGPPPRPTIILPPRPSMEAFFGGGGGVGASPGPMTLVSSFFPDNYADSPDYHRSFSQLLAGAIGSPMAMGFFSPNATNNSSAKEGNESDKQLGFKQSRPMNLVVARSPMFTIPPGLSPSGLLNSPGFFSPQSPFGISHQQALAQVTAQAAFAHSHMQMHEQMQPEYQPSSISSAKESSSPNHSSFTFDDQSQPSILPSTSDPKSTLIESAEAVQTERKYQPISQPSDRPTNDGYNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVERSPDGQITEIIYKGQHNHEAPSNKRGKDGSEGNGNMNSQSQIGHVNKSSEAAQVASSDSEEMGETEVNEDGDGDEPNPKRRNIEAGTTGVPLPHKTLTEPKIVVQTRSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTSAGCNVRKHVERAATDVKAVITTYEGKHNHDVPAARNSGHNTANNNPAQTKPHKFLSQKHPLSKEMDFGTNTQRAGILRLKEEQLERKGKLKKRPMRRQINQSPKKNDSGEIQYFSSEHIIANIHSIQAN 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6955697 6958385 - Conep16aG0283700.1 Cone16ag0479 454913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0479 548 ProSiteProfiles WRKY domain profile. 386 451 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone16ag0479 548 MobiDBLite consensus disorder prediction 501 529 - -
Cone16ag0479 548 Pfam WRKY DNA -binding domain 241 297 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone16ag0479 548 Pfam WRKY DNA -binding domain 392 449 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone16ag0479 548 MobiDBLite consensus disorder prediction 447 472 - -
Cone16ag0479 548 SMART WRKY_cls 240 298 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone16ag0479 548 SMART WRKY_cls 391 450 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone16ag0479 548 MobiDBLite consensus disorder prediction 170 241 - -
Cone16ag0479 548 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 163 476 IPR044810 GO:0003700(InterPro)
Cone16ag0479 548 SUPERFAMILY WRKY DNA-binding domain 238 299 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone16ag0479 548 ProSiteProfiles WRKY domain profile. 241 299 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone16ag0479 548 MobiDBLite consensus disorder prediction 306 339 - -
Cone16ag0479 548 FunFam WRKY transcription factor 33 378 444 - -
Cone16ag0479 548 Gene3D WRKY domain 376 452 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone16ag0479 548 Gene3D WRKY domain 228 300 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone16ag0479 548 FunFam WRKY transcription factor 227 300 - -
Cone16ag0479 548 MobiDBLite consensus disorder prediction 453 471 - -
Cone16ag0479 548 MobiDBLite consensus disorder prediction 163 376 - -
Cone16ag0479 548 MobiDBLite consensus disorder prediction 1 35 - -
Cone16ag0479 548 SUPERFAMILY WRKY DNA-binding domain 383 451 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1300 Cone-Chr13:9709099 Cone16ag0479 Cone-Chr16:6955697 1.39E-63 dispersed
Cone14ag1206 Cone-Chr14:9812542 Cone16ag0479 Cone-Chr16:6955697 4.05E-80 dispersed
Cone16ag0479 Cone-Chr16:6955697 Cone3ag0455 Cone-Chr3:2192890 7.51E-74 dispersed
Cone16ag0479 Cone-Chr16:6955697 Cone2ag0536 Cone-Chr2:2960579 2.09e-315 wgd
Cone16ag0479 Cone-Chr16:6955697 Cone4ag0599 Cone-Chr4:2739002 2.47E-44 wgd
Cone16ag0479 Cone-Chr16:6955697 Cone4ag0520 Cone-Chr4:2323337 1.16E-186 wgd
Cone16ag0479 Cone-Chr16:6955697 Cone7ag0493 Cone-Chr7:2269946 5.15E-183 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44947 PF07714 PK_Tyr_Ser-Thr 9.30E-29 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0479 - - - 0.0