Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0485 ATGCCTTCTCTTCCCAACTTCTTCCCAAGTTGGAGAACTGAGCTATGCCTTCGGGTGAAGAATTCAACAAACGATGAGACACAGAACAACGGCGAAGACAACCCAATTGCTTCGAATCCCACGTTATCATCGTCAGTCGAATGCTACGCCTGCACTCAAGTCGGCGTACCCGTCTTCCACTCCACCACCTGCGACAAGGCGCACCCGCCAGAATGGGAGGCATCCGCCGGGTCGTCTCTCGTCCCCATCCAGTCAAATACCTCCAGAAAGTCCGGTCCGCCCCGCCCTTCGGGCCTCTTCGGCAACGTTCTCGACCCGAGAAGCAAAAAGGTTCAGCGGTTGAACCGAGCGTTCTTACTGGCACGCGCCATGGCGTTAGCCGTTGATCCTCTGTTCTTCTATGCGTTGTCGATAGGAAGAGGCGGGACCCCGTGTCTTTACATGGACGGTGGCTTGGCGGCGATCGTGACCATCGCTCGCACGTGCGTGGACGCGGTGCATTTGTGTCACTTGTGGTTGCAATTCAAGATGGCGTACGTGTCAAGGGAGTCCATGACTGTTGGGTGTGGGAAACTCGTGTGGGACGCACGTGCGATCGCTGCCCATTACTTGAGGTCACTCAAAGGGTTCTGGTTTGATGCTTTCGTCATCCTTCCTGTCCCTCAGGCTGTATTTTGGTTGATATTACCAGGATTGATAAGAAAAGAGCAAATCAAGCTCATTATGACAGTACTTCTGTTAATGTTCTTGTTCCAATTCCTTCCAAAAGTGTACCACTGCATCAGCTTAATGAGAAGAATGGGGAAGGTCACGGGTTACATCTTCGGCTCCATTTGGTGGGGTTTCAGCCTCAATCTCATCGCCTACTTCATCGCCTCTCACGTTGCAGGGGGGTGTTGGTATGTTCTTGCAATACAGCGAGTAGCTTCATGTTTGCAACAACATTGTGCGAGGAACAATTGCGATCTCTCTCTGTCTTGTTCGGAAGAGGTTTGTTACCGGTTACTACAATCAGGTGCAGTTGACATTCCGTGCGGTGGGAATACGACAAGTGCGGTGAGGAAGCCGTTGTGCTTAGATATTACCGGTCCGTTTCAGTATGGGATCTATAAGTCGGCTCTTCCTGTTATTTCGGGGAATTCACTTGCTGTCAAGATCCTCTATCCCATCTTTTGGGGTTTAATGGCTCTGAGCACATTTGGCAATGATCTTGAGCCAACGAGTCACTGGATTGAAGTGATCTTCAGCATTGTTATGGTGCTTAGCGGTCTACTTCTCTTCACTCTATTGATCGGAAACATCCAGGTATTTTTGCATGCTGTGATGGCAAAGAAGAGGAAAATGCAGCTGAGATGCCGAGACATGGAATGGTGGATGAGAAGAAGACAGTTACCTTCTCGTTTAAGACATAGAGTCCGACATTATGAACGTCAAAGATGGACCGCCATGGGAGGAGAAAATGAGATGGAACTCATCAAAGACTTGCCCGACGGTTTACGCAGAGACATTAAGCGCTACCTCTGCCTAGACCTCATGAAAAAGGTACCTCTATTTCACAACTTGGACGATCTTATTCTAGACAACATATGCGACCGTGTTCGTCCCCTAGTATTCTCAAAAGATGAAAAGATTATTAGGGAAGGAGATCCAGTTCCGAGAATGTTATTCATTGTGAGAGGACAAATAGAAAGATGCCAAAGCCTAAGCAAGGGCATAATAGCTACAAGCATTATAGAACTAGGTGGATTTTTAGGTGATGAGCTGTTACTATGGTGTCTTAGACGTCCGTTTATCGACCGGCTTCCTGCCTCGTCTGCTACATTTGTGTGCATTGAACCAACAGAAGCGTATGCTCTAGACGCTAATGATCTGAGGTACATAACGGATCATTTCCGGTACAAATTTGCGAATGAGAGGCTTAAGAAGACAGCTAGGTATTATTCGTCAAATTGGAGAACATGGGCCGCTGTGAATATACAGTTGGGATGGAGACGCTACAGAATGAGGACTAGAGGTCCTGTGATTGCTGTGGTTGAAAATGGCGATGGTGAAAGGAGACTTTTACAGTATGCTGCTATGTTTATGTCGATCAGGCCGCATGATCATCTCGAATAA 2115 47.94 MPSLPNFFPSWRTELCLRVKNSTNDETQNNGEDNPIASNPTLSSSVECYACTQVGVPVFHSTTCDKAHPPEWEASAGSSLVPIQSNTSRKSGPPRPSGLFGNVLDPRSKKVQRLNRAFLLARAMALAVDPLFFYALSIGRGGTPCLYMDGGLAAIVTIARTCVDAVHLCHLWLQFKMAYVSRESMTVGCGKLVWDARAIAAHYLRSLKGFWFDAFVILPVPQAVFWLILPGLIRKEQIKLIMTVLLLMFLFQFLPKVYHCISLMRRMGKVTGYIFGSIWWGFSLNLIAYFIASHVAGGCWYVLAIQRVASCLQQHCARNNCDLSLSCSEEVCYRLLQSGAVDIPCGGNTTSAVRKPLCLDITGPFQYGIYKSALPVISGNSLAVKILYPIFWGLMALSTFGNDLEPTSHWIEVIFSIVMVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRHRVRHYERQRWTAMGGENEMELIKDLPDGLRRDIKRYLCLDLMKKVPLFHNLDDLILDNICDRVRPLVFSKDEKIIREGDPVPRMLFIVRGQIERCQSLSKGIIATSIIELGGFLGDELLLWCLRRPFIDRLPASSATFVCIEPTEAYALDANDLRYITDHFRYKFANERLKKTARYYSSNWRTWAAVNIQLGWRRYRMRTRGPVIAVVENGDGERRLLQYAAMFMSIRPHDHLE 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6972025 6975416 - Conep16aG0284300.1 Cone16ag0485 454919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0485 704 Gene3D Jelly Rolls 515 633 IPR014710 -
Cone16ag0485 704 Pfam Cyclic nucleotide-binding domain 537 627 IPR000595 -
Cone16ag0485 704 SUPERFAMILY Voltage-gated potassium channels 106 438 - -
Cone16ag0485 704 CDD CAP_ED 517 627 IPR000595 -
Cone16ag0485 704 Gene3D Helix hairpin bin 443 508 - -
Cone16ag0485 704 SMART cnmp_10 517 643 IPR000595 -
Cone16ag0485 704 MobiDBLite consensus disorder prediction 73 102 - -
Cone16ag0485 704 MobiDBLite consensus disorder prediction 78 93 - -
Cone16ag0485 704 SUPERFAMILY cAMP-binding domain-like 444 631 IPR018490 -
Cone16ag0485 704 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 99 669 - -
Cone16ag0485 704 Gene3D - 148 440 - -
Cone16ag0485 704 ProSiteProfiles cAMP/cGMP binding motif profile. 517 627 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1089 Cone-Chr14:9139951 Cone16ag0485 Cone-Chr16:6972025 2.66E-215 dispersed
Cone15ag1101 Cone-Chr15:9035099 Cone16ag0485 Cone-Chr16:6972025 1.27E-209 dispersed
Cone16ag0485 Cone-Chr16:6972025 Cone1ag1209 Cone-Chr1:55940193 4.78E-266 dispersed
Cone16ag0485 Cone-Chr16:6972025 Cone2ag0531 Cone-Chr2:2929772 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0485 K05391 - rcu:8281281 1127.85