Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0494 ATGGCGGCTTCGTTTCGAAATCTGCTTTCATGGGCATTGGCAATTTCAATCCTTCTAGTTCAGTCTAACTGCAGTAGAATTAGTACTTTTGCTGCTGACAAGAGAGTTAGCCATGGCTGGCAAGCTGCTCATGCAACGTTTTATGGTGACATGAATGCCAGAGAAACTATGCAGGGAGCTTGTGGATATGGAGACCTCAAATCGCAAGGCTATGGCTTAAACACTGCAGCCCTAAGTGTTGCACTCTTCAACGATGGTCAAACTTGTGGTGCTTGCTTTGAGATCATGTGTGTCAATGACCCAAAATGGTGCATCCCAAATGCTGGCTCAATCAAAATCACAGGCACTAATCTATGCCCTGCAGATTTTAGCAAACCCACAGGAAATTGGTGCAATACACCACAAAAACACTTTGACTTGTCCATGCCCATGTTCACAAAACTCGCAATTTCCAAAAGCGGGATAATCCCGGTTCGTTTTCGCAGAACCTCATGTGCTAAGCAAGGTGGGGTTAAGTTCGAGATTAAGGGAAATCCCGATTGGATGCTTGTCTTGTTGTACAATGTTGGCGGGGCCGGAGATGTTGCTAATGTACAAATTAAGGGTTCGAGCAGTGGTTGGCTTCAAATGGCAAGGAATTGGGGGCAAAATTGGCAGATTGGAACGAAATTGGTAGGCCAAAGCTTGTCATTCCAAGTTACTACAAGTGATGGAAAAATGTTGGAGTTTGATGATGTTTCACCTATGAACTGGAGTTTTGGTCAGAGCTTTGAGGCAAATAGTAACTTTTAG 792 44.19 MAASFRNLLSWALAISILLVQSNCSRISTFAADKRVSHGWQAAHATFYGDMNARETMQGACGYGDLKSQGYGLNTAALSVALFNDGQTCGACFEIMCVNDPKWCIPNAGSIKITGTNLCPADFSKPTGNWCNTPQKHFDLSMPMFTKLAISKSGIIPVRFRRTSCAKQGGVKFEIKGNPDWMLVLLYNVGGAGDVANVQIKGSSSGWLQMARNWGQNWQIGTKLVGQSLSFQVTTSDGKMLEFDDVSPMNWSFGQSFEANSNF 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7031250 7034243 + Conep16aG0285200.1 Cone16ag0494 454928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0494 263 Pfam Lytic transglycolase 75 160 IPR009009 -
Cone16ag0494 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 259 IPR007117 -
Cone16ag0494 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 170 IPR007112 -
Cone16ag0494 263 Gene3D - 168 263 IPR036749 -
Cone16ag0494 263 PRINTS Expansin signature 145 158 IPR002963 GO:0009664(InterPro)
Cone16ag0494 263 PRINTS Expansin signature 111 121 IPR002963 GO:0009664(InterPro)
Cone16ag0494 263 PRINTS Expansin signature 169 181 IPR002963 GO:0009664(InterPro)
Cone16ag0494 263 PRINTS Expansin signature 70 84 IPR002963 GO:0009664(InterPro)
Cone16ag0494 263 PRINTS Expansin signature 181 202 IPR002963 GO:0009664(InterPro)
Cone16ag0494 263 PRINTS Expansin signature 128 145 IPR002963 GO:0009664(InterPro)
Cone16ag0494 263 PRINTS Expansin signature 245 261 IPR002963 GO:0009664(InterPro)
Cone16ag0494 263 PRINTS Expansin signature 97 108 IPR002963 GO:0009664(InterPro)
Cone16ag0494 263 PRINTS Expansin signature 216 237 IPR002963 GO:0009664(InterPro)
Cone16ag0494 263 SUPERFAMILY Barwin-like endoglucanases 39 188 IPR036908 -
Cone16ag0494 263 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576(InterPro)
Cone16ag0494 263 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576(InterPro)
Cone16ag0494 263 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576(InterPro)
Cone16ag0494 263 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576(InterPro)
Cone16ag0494 263 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576(InterPro)
Cone16ag0494 263 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576(InterPro)
Cone16ag0494 263 PANTHER EXPANSIN-A15 23 260 IPR002963 GO:0009664(InterPro)
Cone16ag0494 263 Pfam Expansin C-terminal domain 171 248 IPR007117 -
Cone16ag0494 263 CDD DPBB_EXPA_N 39 165 - -
Cone16ag0494 263 SUPERFAMILY PHL pollen allergen 167 258 IPR036749 -
Cone16ag0494 263 Gene3D - 25 166 IPR036908 -
Cone16ag0494 263 SMART dpbb_1 75 160 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0494 Cone-Chr16:7031250 Cone2ag0519 Cone-Chr2:2877933 1.76E-143 dispersed
Cone16ag0494 Cone-Chr16:7031250 Cone2ag0518 Cone-Chr2:2874278 1.61E-55 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0494 - - - 0.0