Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0522 ATGGGTTCTGTTTGCTGCTGTTTAAGCGTCGAGGATTTTGAAGACTACGCTACTCTGAGCAGATCTGTGTACAGGAACTGTGTTTGTCTTAGTTGCTTTGTTCAGAACTTCCTAGATGTGTATACATCAGTATTCCATAGAGGGGAACTCCATTCCATCTCTTCCTCAATTCAAGGAGCAACGTCTATGACTTCTACGCCCTCACTCGACAATTCTTTGTCTGATATCTACCGTTCTCCTCCAAGGCCATTACCTTATGATGTCGATCCAAGATACATACGCCTTCAAAGGGACGGACTAGTTTCAAGGCGTGAGAAGGGATCAAGCCATTTGCATGAGGAATCAGAGCCTCTAAGAAGTGACGTAGATACAGACCACCCAGAATCTTTGAGCACTTCGGAGAAATGGGATGGAACAACGCCTTGTGGAGATGAGTCGAAAGATAATCTTTTCAAGTCCTCTCCCAAGTTCTCTTCGGCAAAAATCAATAGTGGGGTTGGGCTGATGTATATGTCGGCTGAAGATGAGGATGTCTGTCCCACATGTCTTGATGAATATACTCCAGAGAATCCTAAGATAATGACCAAATGCTCACATCATTTCCATCTTGGATGCATCTATGAGTGGATGGAAAGAAGTGAAAATTGTCCGGTTTGTGGCAAGGTGATGGATTTCGATGAAACGAATTGA 690 43.77 MGSVCCCLSVEDFEDYATLSRSVYRNCVCLSCFVQNFLDVYTSVFHRGELHSISSSIQGATSMTSTPSLDNSLSDIYRSPPRPLPYDVDPRYIRLQRDGLVSRREKGSSHLHEESEPLRSDVDTDHPESLSTSEKWDGTTPCGDESKDNLFKSSPKFSSAKINSGVGLMYMSAEDEDVCPTCLDEYTPENPKIMTKCSHHFHLGCIYEWMERSENCPVCGKVMDFDETN 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7231859 7235012 + Conep16aG0288200.1 Cone16ag0522 454956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0522 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 227 IPR013083 -
Cone16ag0522 229 SUPERFAMILY RING/U-box 172 225 - -
Cone16ag0522 229 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 223 - GO:0004842(PANTHER)
Cone16ag0522 229 MobiDBLite consensus disorder prediction 57 82 - -
Cone16ag0522 229 MobiDBLite consensus disorder prediction 103 132 - -
Cone16ag0522 229 SMART ring_2 179 219 IPR001841 -
Cone16ag0522 229 MobiDBLite consensus disorder prediction 103 154 - -
Cone16ag0522 229 CDD RING-H2_AIRP1-like 175 223 - -
Cone16ag0522 229 Pfam Ring finger domain 178 219 IPR001841 -
Cone16ag0522 229 ProSiteProfiles Zinc finger RING-type profile. 179 219 IPR001841 -
Cone16ag0522 229 MobiDBLite consensus disorder prediction 57 75 - -
Cone16ag0522 229 FunFam E3 ubiquitin-protein ligase At3g02290-like 156 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0522 Cone-Chr16:7231859 Cone18ag1148 Cone-Chr18:8266713 4.28E-108 dispersed
Cone16ag0522 Cone-Chr16:7231859 Cone2ag0482 Cone-Chr2:2619200 1.90E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0522 - - - 0.0