Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0528 ATGAAGAGAGAACTTGACCGGGAAGAAGCGTCAATGGCATTTCATACAGGTAAGGCGAAGCTCATCTGGGAAGAATTAGAAGAAGAAGAAGAAGCACAGCGCCCCAGGAATCTCCCGGCCGTCTTCGGCGGCGGCGGGGGCATGGATGAGTTGCTGGCCGTTCTGGGTTACAAAGTACGTTCATCGGAGATGGATGACGTGGCGGAGAAGCTTGAACAGCTGGAAATGGTGATGGGCTCAGCGGCTCAAGAAGATGGGGCTTCTAATCTATATACTGACACTGTTCATTACAACCCGTCTGATCTCTCGGGCTGGGTCGAAAGCATGTTGTCTGAATTCAACGATCCTCTCCTAACGCAATCTCAAACCGGCGTTCCAAATGGCGTTTACGAGGATGATTCCGAGTACGATCTGAGAGTAATCCCAGGCATTGCAGCTAACTACCCACCACCCCGGCCACAAAACAGCTCAGAAAACCAGCCTTCAAAACGGTTCAGATCCTCGACCCGGTTTATTCCACCCGAACCGCTTTTGCCTCCCTGTCCCGAACGGTCCCGGTCTGTAGTCGTCATTGACACGCAAGAAGCCGGCGTGAGGCTAGTCCACACTCTCATGGCTTGCGCGGAAGCCGTCCAGCAGGACAATCTCAAACTAGCCGACGCTCTCATCAAGCAAATTGGCTTATTAGCCGCATCTCAACCTGGCGCCATGCGGAAAGTCGCGACTTACTTTGCAGAAGCTCTGGCTCGTCGTGTTTACGGCATCTTCCCACAAGGTGGTCTTGAATTCGACACCGCGTATTGTGATGTTCTTCAGATGCATTTCTATGAATCCTGCCCTTACCTTAAGTTCGCGCATTTCACGGCGAATCAACTCATACTCGGGTCGTTCAATTCTACGGGTAAGAACAGAGTGCATGTGATCGATTTCGGGCTGAAACAGGGGATGCAATGGCCAGCTTTAATGCAGGCTCTTGCATTGCGGCCCGGTGGGCCTCCAGTTTTCCGCCTCACCGCAATCAGCCATGCTGACGAACTTCAGCCAGTGGGATTGAAACTGGCCCAGTTTGCGGATACACTTGGGGTCGAGTTCGAGTTCCGGGGGTTTGTTTGTAACAGCTTGGCTGATATTGAACTGGACCTGCTTGATATCGGCCCGCCCGAGATCGAGACCGTGGCGGTTAACTCGGTTCTCGAACTTCACCCCTTTCTGGCCAATCCCGGTTCCATAGAGGAGGTTCTGTGCTTGATCAAATCGATGAAGCCAAAAATTGTGACAATTGTGGAGCAGGAAGGGAATCATAATGGACCAATTTTCGTGGAGCGGTTCAATGAGGCATTGAATTATTACTCGAACCTGTTCGACTCGCTCGAGGTGGTAGGCCCACCGAATCAAGACCTCCTTATGTCAGAGGTGTATTTGGGTAGGCAGATATGTAATGTGGTTGCTTGTGAAGGTGCAGACCGGGTGGAACGGCACGAGACATTGACTCAATGGCAAGCCCGGTTGGGTCTGGCCGGTTTCGACCCGGTTCATATCGGGTCGAATGCTTTTAAGCAGGCAAGTACTTTGTTGGCGCTTTTTGCAGGGAGAGATGGGTATGAAGTGGAGGAGAGGAATGGTTGCTTGATGCTTACTTGGCATACTCGGCCGTTGATTGCAATGTCAGCTTGGCAACCCTGCGGATGTGGCTGTGATGGGTAG 1704 52.05 MKRELDREEASMAFHTGKAKLIWEELEEEEEAQRPRNLPAVFGGGGGMDELLAVLGYKVRSSEMDDVAEKLEQLEMVMGSAAQEDGASNLYTDTVHYNPSDLSGWVESMLSEFNDPLLTQSQTGVPNGVYEDDSEYDLRVIPGIAANYPPPRPQNSSENQPSKRFRSSTRFIPPEPLLPPCPERSRSVVVIDTQEAGVRLVHTLMACAEAVQQDNLKLADALIKQIGLLAASQPGAMRKVATYFAEALARRVYGIFPQGGLEFDTAYCDVLQMHFYESCPYLKFAHFTANQLILGSFNSTGKNRVHVIDFGLKQGMQWPALMQALALRPGGPPVFRLTAISHADELQPVGLKLAQFADTLGVEFEFRGFVCNSLADIELDLLDIGPPEIETVAVNSVLELHPFLANPGSIEEVLCLIKSMKPKIVTIVEQEGNHNGPIFVERFNEALNYYSNLFDSLEVVGPPNQDLLMSEVYLGRQICNVVACEGADRVERHETLTQWQARLGLAGFDPVHIGSNAFKQASTLLALFAGRDGYEVEERNGCLMLTWHTRPLIAMSAWQPCGCGCDG 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7324283 7326442 + Conep16aG0288800.1 Cone16ag0528 454962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0528 567 SMART DELLA_2 49 123 - -
Cone16ag0528 567 Pfam Transcriptional regulator DELLA protein N terminal 49 115 IPR021914 -
Cone16ag0528 567 Coils Coil 64 84 - -
Cone16ag0528 567 FunFam DELLA protein GAI 47 113 - -
Cone16ag0528 567 ProSiteProfiles GRAS family profile. 191 559 IPR005202 -
Cone16ag0528 567 Gene3D - 47 113 IPR038088 -
Cone16ag0528 567 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 166 558 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Cone16ag0528 567 MobiDBLite consensus disorder prediction 150 167 - -
Cone16ag0528 567 MobiDBLite consensus disorder prediction 144 171 - -
Cone16ag0528 567 Pfam GRAS domain family 200 559 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0528 Cone-Chr16:7324283 Cone19ag0747 Cone-Chr19:6093751 2.14E-212 dispersed
Cone13ag0741 Cone-Chr13:7068584 Cone16ag0528 Cone-Chr16:7324283 9.74E-216 wgd
Cone16ag0528 Cone-Chr16:7324283 Cone2ag0475 Cone-Chr2:2552787 0 wgd
Cone16ag0528 Cone-Chr16:7324283 Cone6ag0390 Cone-Chr6:1896382 1.61E-197 wgd
Cone16ag0528 Cone-Chr16:7324283 Cone9ag0417 Cone-Chr9:1924848 2.32E-192 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44948 PF00141 peroxidase 1.20E-57 CL0617 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0528 K14494 - cit:102629959 698.353