Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0528 ATGAAGAGAGAACTTGACCGGGAAGAAGCGTCAATGGCATTTCATACAGGTAAGGCGAAGCTCATCTGGGAAGAATTAGAAGAAGAAGAAGAAGCACAGCGCCCCAGGAATCTCCCGGCCGTCTTCGGCGGCGGCGGGGGCATGGATGAGTTGCTGGCCGTTCTGGGTTACAAAGTACGTTCATCGGAGATGGATGACGTGGCGGAGAAGCTTGAACAGCTGGAAATGGTGATGGGCTCAGCGGCTCAAGAAGATGGGGCTTCTAATCTATATACTGACACTGTTCATTACAACCCGTCTGATCTCTCGGGCTGGGTCGAAAGCATGTTGTCTGAATTCAACGATCCTCTCCTAACGCAATCTCAAACCGGCGTTCCAAATGGCGTTTACGAGGATGATTCCGAGTACGATCTGAGAGTAATCCCAGGCATTGCAGCTAACTACCCACCACCCCGGCCACAAAACAGCTCAGAAAACCAGCCTTCAAAACGGTTCAGATCCTCGACCCGGTTTATTCCACCCGAACCGCTTTTGCCTCCCTGTCCCGAACGGTCCCGGTCTGTAGTCGTCATTGACACGCAAGAAGCCGGCGTGAGGCTAGTCCACACTCTCATGGCTTGCGCGGAAGCCGTCCAGCAGGACAATCTCAAACTAGCCGACGCTCTCATCAAGCAAATTGGCTTATTAGCCGCATCTCAACCTGGCGCCATGCGGAAAGTCGCGACTTACTTTGCAGAAGCTCTGGCTCGTCGTGTTTACGGCATCTTCCCACAAGGTGGTCTTGAATTCGACACCGCGTATTGTGATGTTCTTCAGATGCATTTCTATGAATCCTGCCCTTACCTTAAGTTCGCGCATTTCACGGCGAATCAACTCATACTCGGGTCGTTCAATTCTACGGGTAAGAACAGAGTGCATGTGATCGATTTCGGGCTGAAACAGGGGATGCAATGGCCAGCTTTAATGCAGGCTCTTGCATTGCGGCCCGGTGGGCCTCCAGTTTTCCGCCTCACCGCAATCAGCCATGCTGACGAACTTCAGCCAGTGGGATTGAAACTGGCCCAGTTTGCGGATACACTTGGGGTCGAGTTCGAGTTCCGGGGGTTTGTTTGTAACAGCTTGGCTGATATTGAACTGGACCTGCTTGATATCGGCCCGCCCGAGATCGAGACCGTGGCGGTTAACTCGGTTCTCGAACTTCACCCCTTTCTGGCCAATCCCGGTTCCATAGAGGAGGTTCTGTGCTTGATCAAATCGATGAAGCCAAAAATTGTGACAATTGTGGAGCAGGAAGGGAATCATAATGGACCAATTTTCGTGGAGCGGTTCAATGAGGCATTGAATTATTACTCGAACCTGTTCGACTCGCTCGAGGTGGTAGGCCCACCGAATCAAGACCTCCTTATGTCAGAGGTGTATTTGGGTAGGCAGATATGTAATGTGGTTGCTTGTGAAGGTGCAGACCGGGTGGAACGGCACGAGACATTGACTCAATGGCAAGCCCGGTTGGGTCTGGCCGGTTTCGACCCGGTTCATATCGGGTCGAATGCTTTTAAGCAGGCAAGTACTTTGTTGGCGCTTTTTGCAGGGAGAGATGGGTATGAAGTGGAGGAGAGGAATGGTTGCTTGATGCTTACTTGGCATACTCGGCCGTTGATTGCAATGTCAGCTTGGCAACCCTGCGGATGTGGCTGTGATGGGTAG 1704 52.05 MKRELDREEASMAFHTGKAKLIWEELEEEEEAQRPRNLPAVFGGGGGMDELLAVLGYKVRSSEMDDVAEKLEQLEMVMGSAAQEDGASNLYTDTVHYNPSDLSGWVESMLSEFNDPLLTQSQTGVPNGVYEDDSEYDLRVIPGIAANYPPPRPQNSSENQPSKRFRSSTRFIPPEPLLPPCPERSRSVVVIDTQEAGVRLVHTLMACAEAVQQDNLKLADALIKQIGLLAASQPGAMRKVATYFAEALARRVYGIFPQGGLEFDTAYCDVLQMHFYESCPYLKFAHFTANQLILGSFNSTGKNRVHVIDFGLKQGMQWPALMQALALRPGGPPVFRLTAISHADELQPVGLKLAQFADTLGVEFEFRGFVCNSLADIELDLLDIGPPEIETVAVNSVLELHPFLANPGSIEEVLCLIKSMKPKIVTIVEQEGNHNGPIFVERFNEALNYYSNLFDSLEVVGPPNQDLLMSEVYLGRQICNVVACEGADRVERHETLTQWQARLGLAGFDPVHIGSNAFKQASTLLALFAGRDGYEVEERNGCLMLTWHTRPLIAMSAWQPCGCGCDG 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7324283 7326442 + Conep16aG0288800.1 Cone16ag0528 454962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0528 567 SMART DELLA_2 49 123 - -
Cone16ag0528 567 Pfam Transcriptional regulator DELLA protein N terminal 49 115 IPR021914 -
Cone16ag0528 567 Coils Coil 64 84 - -
Cone16ag0528 567 FunFam DELLA protein GAI 47 113 - -
Cone16ag0528 567 ProSiteProfiles GRAS family profile. 191 559 IPR005202 -
Cone16ag0528 567 Gene3D - 47 113 IPR038088 -
Cone16ag0528 567 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 166 558 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Cone16ag0528 567 MobiDBLite consensus disorder prediction 150 167 - -
Cone16ag0528 567 MobiDBLite consensus disorder prediction 144 171 - -
Cone16ag0528 567 Pfam GRAS domain family 200 559 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0528 K14494 - - cit:102629959 698.353
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0528 Cone-Chr16:7324283 Cone19ag0747 Cone-Chr19:6093751 2.14E-212 dispersed
Cone13ag0741 Cone-Chr13:7068584 Cone16ag0528 Cone-Chr16:7324283 9.74E-216 wgd
Cone16ag0528 Cone-Chr16:7324283 Cone2ag0475 Cone-Chr2:2552787 0 wgd
Cone16ag0528 Cone-Chr16:7324283 Cone6ag0390 Cone-Chr6:1896382 1.61E-197 wgd
Cone16ag0528 Cone-Chr16:7324283 Cone9ag0417 Cone-Chr9:1924848 2.32E-192 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g489 . . . Bda15g00173 . Bpe15g01068 Bma03g00331 . . Cmo04g01432 Cma04g01358 . Car04g01436 . . Cpe13g00810 . . . . . . . . Cla05g02132 Cam05g2287 Cec05g2307 Cco05g2349 Clacu05g2282 Cmu05g2146 Cre05g2267 . . . Cone16ag0528 Lsi02g01719 . Chy10g01336 Cme10g00060 . . Bda14g00342 . Bpe04g01876 Bpe15g01327 . Bma08g00945 . Cmo04g02707 Cmo15g00456 Cma04g02586 Cma15g00448 Car04g02497 Car15g00415 Cpe01g01227 Cpe01g02247 . . . . . . . . . . . . . . Lsi04g00058 Csa05g01757 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone19ag1332 . 70 750 GRAS Transcription Factor Family AT2G37650 54.0 2.1e-200 696.4
Cone10ag0315 . 70 742 GRAS Transcription Factor Family AT2G37650 54.7 2.2e-197 686.4
Cone3ag0347 . 107 287 GRAS Transcription Factor Family AT2G37650 56.7 1.2e-57 222.2
Cone5ag0258 . 243 700 GRAS Transcription Factor Family AT3G46600 51.2 2.9e-120 429.9
Cone4ag1048 . 295 669 GRAS Transcription Factor Family AT3G46600 54.9 2.0e-118 423.7
Cone7ag1079 . 258 636 GRAS Transcription Factor Family AT3G46600 51.5 1.5e-108 391.0
Cone12ag0161 . 62 476 GRAS Transcription Factor Family AT3G49950 57.3 3.3e-129 459.1
Cone3ag0347 . 107 288 GRAS Transcription Factor Family AT1G07530 50.7 8.7e-51 199.5
Cone12ag0754 . 85 584 GRAS Transcription Factor Family AT4G36710 50.2 7.8e-122 434.9
Cone9ag0274 . 50 452 GRAS Transcription Factor Family AT5G41920 68.0 2.9e-146 515.8
Cone6ag0242 . 79 456 GRAS Transcription Factor Family AT5G41920 69.8 8.5e-146 514.2
Cone4ag1007 . 314 701 GRAS Transcription Factor Family AT5G41920 54.7 1.0e-111 401.0
Cone7ag1134 . 290 679 GRAS Transcription Factor Family AT5G41920 53.9 3.4e-110 396.0
Cone15ag0066 . 36 626 GRAS Transcription Factor Family AT5G52510 54.7 3.6e-151 532.7
Cone14ag0063 . 66 628 GRAS Transcription Factor Family AT5G52510 54.8 1.9e-147 520.4
Cone9ag1542 . 1 628 GRAS Transcription Factor Family AT5G66770 57.5 5.4e-178 621.7
Cone6ag1617 . 1 621 GRAS Transcription Factor Family AT5G66770 59.3 6.0e-177 618.2
Cone10ag1246 . 40 531 GRAS Transcription Factor Family AT1G50600 61.0 2.9e-162 569.3
Cone3ag1294 . 42 531 GRAS Transcription Factor Family AT1G50600 60.8 1.6e-160 563.5
Cone14ag1207 . 25 394 GRAS Transcription Factor Family AT1G50600 68.2 2.1e-149 526.6
Cone1ag0045 . 96 533 GRAS Transcription Factor Family AT1G50600 56.0 4.8e-133 472.2
Cone6ag0094 . 219 589 GRAS Transcription Factor Family AT1G50600 61.7 6.2e-133 471.9
Cone9ag0110 . 216 589 GRAS Transcription Factor Family AT1G50600 62.0 8.2e-133 471.5
Cone5ag1816 . 117 554 GRAS Transcription Factor Family AT1G50600 53.8 5.5e-129 458.8
Cone7ag1483 . 1 339 GRAS Transcription Factor Family AT1G50600 53.6 1.9e-97 354.0
Cone15ag1224 . 1 164 GRAS Transcription Factor Family AT1G50600 72.1 6.0e-67 252.7
Cone8ag0328 . 1 626 GRAS Transcription Factor Family AT1G63100 51.2 1.5e-163 573.9
Cone13ag0741 . 36 550 GRAS Transcription Factor Family AT1G14920 70.6 1.3e-202 703.4
Cone19ag0747 . 39 550 GRAS Transcription Factor Family AT1G14920 71.2 2.7e-200 695.7
Cone9ag0417 . 26 594 GRAS Transcription Factor Family AT1G14920 63.3 4.9e-194 674.9
Cone6ag0390 . 29 597 GRAS Transcription Factor Family AT1G14920 62.3 1.4e-193 673.3
Cone2ag0475 . 55 574 GRAS Transcription Factor Family AT1G14920 58.9 4.6e-168 588.6
Cone16ag0528 . 45 559 GRAS Transcription Factor Family AT1G14920 60.0 1.0e-167 587.4
Cone13ag0741 . 1 551 GRAS Transcription Factor Family AT1G66350 58.5 2.5e-171 599.4
Cone2ag0475 . 55 574 GRAS Transcription Factor Family AT1G66350 61.5 3.3e-171 599.0
Cone19ag0747 . 1 551 GRAS Transcription Factor Family AT1G66350 58.8 1.3e-170 597.0
Cone16ag0528 . 47 559 GRAS Transcription Factor Family AT1G66350 61.5 4.0e-169 592.0
Cone9ag0417 . 1 595 GRAS Transcription Factor Family AT1G66350 53.7 2.1e-162 569.7
Cone6ag0390 . 32 598 GRAS Transcription Factor Family AT1G66350 55.6 4.0e-161 565.5
Cone1ag0630 . 224 752 GRAS Transcription Factor Family AT1G07520 53.0 2.4e-148 523.1
Cone5ag1134 . 221 749 GRAS Transcription Factor Family AT1G07520 54.5 8.5e-146 514.6
Cone7ag1079 . 134 636 GRAS Transcription Factor Family AT1G07520 51.1 3.8e-138 489.2
Cone10ag1246 . 19 531 GRAS Transcription Factor Family AT5G48150 64.1 7.7e-186 647.5
Cone3ag1294 . 109 531 GRAS Transcription Factor Family AT5G48150 72.1 3.4e-181 632.1
Cone14ag1207 . 1 394 GRAS Transcription Factor Family AT5G48150 62.8 6.6e-145 511.5
Cone9ag0110 . 216 590 GRAS Transcription Factor Family AT5G48150 65.2 2.2e-140 496.5
Cone6ag0094 . 219 590 GRAS Transcription Factor Family AT5G48150 64.9 4.9e-140 495.4
Cone1ag0045 . 82 533 GRAS Transcription Factor Family AT5G48150 56.0 1.0e-137 487.6
Cone5ag1816 . 103 554 GRAS Transcription Factor Family AT5G48150 53.6 5.4e-131 465.3
Cone7ag1483 . 1 334 GRAS Transcription Factor Family AT5G48150 58.4 1.9e-107 387.1
Cone15ag1224 . 1 165 GRAS Transcription Factor Family AT5G48150 71.1 8.0e-66 248.8
Cone13ag0741 . 38 558 GRAS Transcription Factor Family AT2G01570 68.3 5.2e-205 711.4
Cone19ag0747 . 41 550 GRAS Transcription Factor Family AT2G01570 68.7 4.9e-203 704.9
Cone9ag0417 . 30 594 GRAS Transcription Factor Family AT2G01570 62.4 4.1e-194 675.2
Cone6ag0390 . 33 597 GRAS Transcription Factor Family AT2G01570 60.8 7.1e-194 674.5
Cone2ag0475 . 57 574 GRAS Transcription Factor Family AT2G01570 59.3 8.4e-171 597.8
Cone16ag0528 . 49 559 GRAS Transcription Factor Family AT2G01570 58.7 3.0e-168 589.3
Cone13ag0741 . 1 551 GRAS Transcription Factor Family AT1G66350 58.5 2.5e-171 599.4
Cone2ag0475 . 55 574 GRAS Transcription Factor Family AT1G66350 61.5 3.3e-171 599.0
Cone19ag0747 . 1 551 GRAS Transcription Factor Family AT1G66350 58.8 1.3e-170 597.0
Cone16ag0528 . 47 559 GRAS Transcription Factor Family AT1G66350 61.5 4.0e-169 592.0
Cone9ag0417 . 1 595 GRAS Transcription Factor Family AT1G66350 53.7 2.1e-162 569.7
Cone6ag0390 . 32 598 GRAS Transcription Factor Family AT1G66350 55.6 4.0e-161 565.5
Cone2ag0475 . 57 574 GRAS Transcription Factor Family AT3G03450 62.5 6.4e-173 604.7
Cone19ag0747 . 41 550 GRAS Transcription Factor Family AT3G03450 61.7 1.3e-170 597.0
Cone13ag0741 . 38 550 GRAS Transcription Factor Family AT3G03450 60.3 6.6e-170 594.7
Cone9ag0417 . 30 594 GRAS Transcription Factor Family AT3G03450 55.3 1.0e-162 570.9
Cone6ag0390 . 33 597 GRAS Transcription Factor Family AT3G03450 55.0 1.3e-162 570.5
Cone16ag0528 . 49 559 GRAS Transcription Factor Family AT3G03450 59.4 4.8e-160 562.0
Cone19ag0747 . 37 550 GRAS Transcription Factor Family AT5G17490 58.9 5.6e-158 555.1
Cone13ag0741 . 34 554 GRAS Transcription Factor Family AT5G17490 58.1 2.8e-157 552.7
Cone2ag0475 . 56 574 GRAS Transcription Factor Family AT5G17490 58.9 6.4e-154 541.6
Cone16ag0528 . 28 559 GRAS Transcription Factor Family AT5G17490 56.7 4.3e-150 528.9
Cone9ag0417 . 1 594 GRAS Transcription Factor Family AT5G17490 50.7 3.5e-144 509.2
Cone6ag0390 . 1 597 GRAS Transcription Factor Family AT5G17490 50.4 3.9e-143 505.8
Cone4ag1449 . 2 520 GRAS Transcription Factor Family AT1G21450 61.0 1.3e-179 627.1
Cone7ag1483 . 1 339 GRAS Transcription Factor Family AT1G21450 73.0 2.7e-140 496.5
Cone3ag1294 . 153 531 GRAS Transcription Factor Family AT1G21450 53.7 6.0e-116 415.6
Cone10ag1246 . 153 531 GRAS Transcription Factor Family AT1G21450 52.9 3.0e-115 413.3
Cone6ag0094 . 221 590 GRAS Transcription Factor Family AT1G21450 51.2 2.1e-108 390.6
Cone9ag0110 . 221 590 GRAS Transcription Factor Family AT1G21450 50.9 6.0e-108 389.0
Cone15ag1224 . 2 164 GRAS Transcription Factor Family AT1G21450 57.6 7.5e-50 196.1
Cone5ag0258 . 273 700 GRAS Transcription Factor Family AT5G59450 51.7 6.8e-123 438.7
Cone4ag1048 . 295 669 GRAS Transcription Factor Family AT5G59450 54.6 1.7e-121 434.1
Cone10ag0315 . 360 742 GRAS Transcription Factor Family AT5G59450 53.5 1.8e-120 430.6
Cone1ag0045 . 30 533 GRAS Transcription Factor Family AT4G17230 58.4 1.0e-159 560.8
Cone5ag1816 . 1 554 GRAS Transcription Factor Family AT4G17230 54.4 1.4e-156 550.4
Cone10ag1246 . 50 531 GRAS Transcription Factor Family AT4G17230 51.5 1.4e-132 470.7
Cone14ag1207 . 25 394 GRAS Transcription Factor Family AT4G17230 55.5 2.4e-116 416.8
Cone6ag0094 . 216 589 GRAS Transcription Factor Family AT4G17230 52.1 3.6e-112 402.9
Cone9ag0110 . 219 589 GRAS Transcription Factor Family AT4G17230 52.3 1.5e-110 397.5
Cone15ag1224 . 1 164 GRAS Transcription Factor Family AT4G17230 56.4 7.4e-49 192.6
Cone10ag1246 . 128 531 GRAS Transcription Factor Family AT2G04890 66.0 1.4e-156 550.1
Cone3ag1294 . 151 531 GRAS Transcription Factor Family AT2G04890 68.5 1.2e-152 537.0
Cone14ag1207 . 6 394 GRAS Transcription Factor Family AT2G04890 61.3 6.0e-139 491.5
Cone9ag0110 . 216 590 GRAS Transcription Factor Family AT2G04890 61.9 5.4e-132 468.4
Cone6ag0094 . 218 590 GRAS Transcription Factor Family AT2G04890 61.4 9.3e-132 467.6
Cone1ag0045 . 154 533 GRAS Transcription Factor Family AT2G04890 57.1 4.2e-116 415.6
Cone4ag1449 . 115 520 GRAS Transcription Factor Family AT2G04890 50.1 1.4e-111 400.6
Cone5ag1816 . 175 554 GRAS Transcription Factor Family AT2G04890 54.7 2.0e-110 396.7
Cone7ag1483 . 4 334 GRAS Transcription Factor Family AT2G04890 53.4 7.4e-97 351.7
Cone15ag1224 . 1 165 GRAS Transcription Factor Family AT2G04890 71.1 1.8e-66 250.8
Cone18ag0079 . 1 462 GRAS Transcription Factor Family AT1G50420 60.0 6.1e-159 558.1
Cone11ag1515 . 1 461 GRAS Transcription Factor Family AT1G50420 59.5 7.9e-159 557.8
Cone1ag1484 . 1 466 GRAS Transcription Factor Family AT1G50420 59.7 2.5e-152 536.2
Cone5ag0474 . 1 466 GRAS Transcription Factor Family AT1G50420 59.9 1.2e-151 533.9
Cone9ag1542 . 1 628 GRAS Transcription Factor Family AT3G50650 52.8 1.1e-148 524.2
Cone6ag1617 . 1 621 GRAS Transcription Factor Family AT3G50650 50.2 1.4e-148 523.9
Cone7ag1134 . 112 680 GRAS Transcription Factor Family AT3G54220 66.9 2.1e-186 649.8
Cone4ag1007 . 118 702 GRAS Transcription Factor Family AT3G54220 65.8 1.9e-184 643.3
Cone6ag0242 . 90 453 GRAS Transcription Factor Family AT3G54220 61.8 1.5e-128 457.6
Cone9ag0274 . 88 453 GRAS Transcription Factor Family AT3G54220 60.7 1.4e-126 451.1
Cone20ag0784 . 88 457 GRAS Transcription Factor Family AT3G54220 56.2 9.5e-115 411.8
Cone9ag1379 . 124 517 GRAS Transcription Factor Family AT4G37650 63.6 5.3e-148 521.9
Cone6ag1458 . 120 513 GRAS Transcription Factor Family AT4G37650 63.1 3.8e-146 515.8
Cone12ag0168 . 125 525 GRAS Transcription Factor Family AT4G37650 61.8 3.0e-143 506.1
Cone8ag0163 . 86 505 GRAS Transcription Factor Family AT4G37650 59.7 5.1e-143 505.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000304 5 4 4 7 5 4 8 4 4 4 4 4 8 4 3 7 4 8 8 4 4 3 4 4 4 4 4 4 4 3 141
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44948 PF00141 peroxidase 1.20E-57 CL0617 Cone TF