Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone16ag0530 | ATGGAGCATATGCTGGGTCTGCTTCGAGTTCACGTACATAGAGGGGTCAATCTTGCTATAAGGGATGTTAGAAGCAGTGACCCTTATGTCGTTATCAAATTGGGCAAGCAGAAATTGAAGACTCGTGTAGTGAATAAGAACATCAATCCGGAGTGGAATGAAGATCTAACTCTGTCGGTCACGGAACCAAATCATACTGTCCAGCTTTTTGTGTTCGATAAAGACGTTTTCTCAATGGACGACAAAATGGGGGATGCTGAGTTTGAAATCGGTTCTTTTCTCGAAGCTGTAAAGATGAAATTAACTGGACTCCCAAGTGGGACCATAATAACAAGAATACAACCAAGTAGGCAGAATTGTTTGTCTGAAGAGAGTTGCATTGTCTGGGAAGATGGCAAAGTTGTCCAGAAGTTGTTTCTTAGACTGAAAAATGTGGAATGTGGGGAAGTCGAAATCCGGTTAGAGTGGATCGATGTTCCTGGCTCCAGGGGCTTGCAGTAA | 501 | 43.11 | MEHMLGLLRVHVHRGVNLAIRDVRSSDPYVVIKLGKQKLKTRVVNKNINPEWNEDLTLSVTEPNHTVQLFVFDKDVFSMDDKMGDAEFEIGSFLEAVKMKLTGLPSGTIITRIQPSRQNCLSEESCIVWEDGKVVQKLFLRLKNVECGEVEIRLEWIDVPGSRGLQ | 166 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 7333253 | 7334302 | + | Conep16aG0289000.1 | Cone16ag0530 | 454964 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone16ag0530 | 166 | Pfam | C2 domain | 6 | 92 | IPR000008 | - | |
| Cone16ag0530 | 166 | Gene3D | C2 domain | 2 | 164 | IPR035892 | - | |
| Cone16ag0530 | 166 | SMART | C2_3c | 7 | 102 | IPR000008 | - | |
| Cone16ag0530 | 166 | CDD | C2_ArfGAP | 5 | 148 | - | - | |
| Cone16ag0530 | 166 | ProSiteProfiles | C2 domain profile. | 1 | 103 | IPR000008 | - | |
| Cone16ag0530 | 166 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 6 | 117 | IPR035892 | - | |
| Cone16ag0530 | 166 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 163 | IPR044562 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone16ag0530 | Cone-Chr16:7333253 | Cone6ag1181 | Cone-Chr6:9080050 | 1.30E-44 | dispersed | |
| Cone13ag0319 | Cone-Chr13:2629010 | Cone16ag0530 | Cone-Chr16:7333253 | 7.18E-82 | transposed | |
| Cone9ag1164 | Cone-Chr9:8284980 | Cone16ag0530 | Cone-Chr16:7333253 | 4.55E-11 | transposed | |
| Cone11ag0281 | Cone-Chr11:1364173 | Cone16ag0530 | Cone-Chr16:7333253 | 9.20E-70 | wgd | |
| Cone13ag0750 | Cone-Chr13:7118508 | Cone16ag0530 | Cone-Chr16:7333253 | 3.98E-62 | wgd | |
| Cone16ag0530 | Cone-Chr16:7333253 | Cone2ag0473 | Cone-Chr2:2544059 | 5.85E-114 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone16ag0530 | - | - | - | 0.0 |