Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone16ag0535 | ATGGCACTTGCCAAAGACCTAATGCCTCATGATTCATTTCAAGCTCAAGTTTCAGATCAGCTTTCTTCACTAGATCATCATATGATGAGTTCTAATGGCTTCACGTTCCGGAACATGATTGGTAGTACCAGTTTTGAGGCTCCCGACCGTGACCATGAGATGATCAAGGTACCTCACACTATGATAAATTTTAAAAGTGGGGTTTATAATAATTTGATGCATAACGATAATCATGAATCCTTGATGAGTTTCGAGCAACGCGATCATCATAAGGAGGAGTATTTGGAATGGGATCAAGGTAACAATTGGGGCGATAGTTATAACGGGCAGTGGAATAATCAGATGATGATGAGTCCAGTTAGATGCAGAAGTAGTAGTACTAGTACTACTACTCATGAGCCCCGTTTTTTAGAATTAGATGTTAATTGCTTTCAAACAGCAAGCAATTTCAGTTCATCAATGGCTAATTCTAGTGGAATAGAAGAGAACCAGAACGGTACTGGACATGATCATGGCTCTACTACTTCTGACTGGTTATACTCTGAAGCAAGTGTTGAAATGGTTGATGGGATTAAGGAATCAGATCAAGCACATGATCATGAGCAACTAGACACTCATATTAAGCGGCCCCATTTGGGAACGAGCGTGCAAGCTCAGAAGAAACAATGCACTAGTGGGAGTAAGAAACCTAAATCCAAGTCATGTCTGGCAAAGGATCCGCAAAGTATAGCAGCCAAGAACCGACGAGAGCGGATTAGCGAGCGCCTTAAGATACTGCAGGACTTGGTACCGAATGGCTCCAAGGTTGATCTGGTGACCATGTTAGAGAAAGCAATAAGTTATGTCAAGTTTCTTCAATTACAAGTAAAGGTTTTGGCGACTGATGAATTTTGGCCGGTTCAAGGAGGGAAGGCTCCTGATATTTCCCAAGTGAGGGAAGCCATTGATGCCATCTTGTCATCTGAGAGAGACAGAACCTCAAGCTCAACTAGTGGGAAGTAA | 1002 | 42.22 | MALAKDLMPHDSFQAQVSDQLSSLDHHMMSSNGFTFRNMIGSTSFEAPDRDHEMIKVPHTMINFKSGVYNNLMHNDNHESLMSFEQRDHHKEEYLEWDQGNNWGDSYNGQWNNQMMMSPVRCRSSSTSTTTHEPRFLELDVNCFQTASNFSSSMANSSGIEENQNGTGHDHGSTTSDWLYSEASVEMVDGIKESDQAHDHEQLDTHIKRPHLGTSVQAQKKQCTSGSKKPKSKSCLAKDPQSIAAKNRRERISERLKILQDLVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISQVREAIDAILSSERDRTSSSTSGK | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 7353606 | 7355273 | + | Conep16aG0289500.1 | Cone16ag0535 | 454969 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone16ag0535 | 333 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 236 | 285 | IPR011598 | GO:0046983(InterPro) | |
Cone16ag0535 | 333 | Gene3D | - | 232 | 293 | IPR036638 | GO:0046983(InterPro) | |
Cone16ag0535 | 333 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 71 | 298 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone16ag0535 | 333 | SMART | finulus | 242 | 291 | IPR011598 | GO:0046983(InterPro) | |
Cone16ag0535 | 333 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 238 | 295 | IPR036638 | GO:0046983(InterPro) | |
Cone16ag0535 | 333 | FunFam | Transcription factor bHLH83 | 234 | 293 | - | - | |
Cone16ag0535 | 333 | Pfam | Helix-loop-helix DNA-binding domain | 245 | 286 | IPR011598 | GO:0046983(InterPro) | |
Cone16ag0535 | 333 | MobiDBLite | consensus disorder prediction | 195 | 243 | - | - | |
Cone16ag0535 | 333 | MobiDBLite | consensus disorder prediction | 215 | 231 | - | - | |
Cone16ag0535 | 333 | CDD | bHLH_AtIND_like | 237 | 299 | - | - | |
Cone16ag0535 | 333 | MobiDBLite | consensus disorder prediction | 152 | 176 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag1041 | Cone-Chr10:7267596 | Cone16ag0535 | Cone-Chr16:7353606 | 2.53E-20 | dispersed | |
Cone16ag0535 | Cone-Chr16:7353606 | Cone4ag1582 | Cone-Chr4:12098263 | 5.39E-16 | dispersed | |
Cone16ag0535 | Cone-Chr16:7353606 | Cone12ag1048 | Cone-Chr12:8728788 | 2.23E-20 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44949 | PF00400 | WD40 | 4.60E-05 | CL0186 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone16ag0535 | - | - | - | 0.0 |