Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0535 ATGGCACTTGCCAAAGACCTAATGCCTCATGATTCATTTCAAGCTCAAGTTTCAGATCAGCTTTCTTCACTAGATCATCATATGATGAGTTCTAATGGCTTCACGTTCCGGAACATGATTGGTAGTACCAGTTTTGAGGCTCCCGACCGTGACCATGAGATGATCAAGGTACCTCACACTATGATAAATTTTAAAAGTGGGGTTTATAATAATTTGATGCATAACGATAATCATGAATCCTTGATGAGTTTCGAGCAACGCGATCATCATAAGGAGGAGTATTTGGAATGGGATCAAGGTAACAATTGGGGCGATAGTTATAACGGGCAGTGGAATAATCAGATGATGATGAGTCCAGTTAGATGCAGAAGTAGTAGTACTAGTACTACTACTCATGAGCCCCGTTTTTTAGAATTAGATGTTAATTGCTTTCAAACAGCAAGCAATTTCAGTTCATCAATGGCTAATTCTAGTGGAATAGAAGAGAACCAGAACGGTACTGGACATGATCATGGCTCTACTACTTCTGACTGGTTATACTCTGAAGCAAGTGTTGAAATGGTTGATGGGATTAAGGAATCAGATCAAGCACATGATCATGAGCAACTAGACACTCATATTAAGCGGCCCCATTTGGGAACGAGCGTGCAAGCTCAGAAGAAACAATGCACTAGTGGGAGTAAGAAACCTAAATCCAAGTCATGTCTGGCAAAGGATCCGCAAAGTATAGCAGCCAAGAACCGACGAGAGCGGATTAGCGAGCGCCTTAAGATACTGCAGGACTTGGTACCGAATGGCTCCAAGGTTGATCTGGTGACCATGTTAGAGAAAGCAATAAGTTATGTCAAGTTTCTTCAATTACAAGTAAAGGTTTTGGCGACTGATGAATTTTGGCCGGTTCAAGGAGGGAAGGCTCCTGATATTTCCCAAGTGAGGGAAGCCATTGATGCCATCTTGTCATCTGAGAGAGACAGAACCTCAAGCTCAACTAGTGGGAAGTAA 1002 42.22 MALAKDLMPHDSFQAQVSDQLSSLDHHMMSSNGFTFRNMIGSTSFEAPDRDHEMIKVPHTMINFKSGVYNNLMHNDNHESLMSFEQRDHHKEEYLEWDQGNNWGDSYNGQWNNQMMMSPVRCRSSSTSTTTHEPRFLELDVNCFQTASNFSSSMANSSGIEENQNGTGHDHGSTTSDWLYSEASVEMVDGIKESDQAHDHEQLDTHIKRPHLGTSVQAQKKQCTSGSKKPKSKSCLAKDPQSIAAKNRRERISERLKILQDLVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISQVREAIDAILSSERDRTSSSTSGK 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7353606 7355273 + Conep16aG0289500.1 Cone16ag0535 454969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0535 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 236 285 IPR011598 GO:0046983(InterPro)
Cone16ag0535 333 Gene3D - 232 293 IPR036638 GO:0046983(InterPro)
Cone16ag0535 333 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 71 298 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone16ag0535 333 SMART finulus 242 291 IPR011598 GO:0046983(InterPro)
Cone16ag0535 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 238 295 IPR036638 GO:0046983(InterPro)
Cone16ag0535 333 FunFam Transcription factor bHLH83 234 293 - -
Cone16ag0535 333 Pfam Helix-loop-helix DNA-binding domain 245 286 IPR011598 GO:0046983(InterPro)
Cone16ag0535 333 MobiDBLite consensus disorder prediction 195 243 - -
Cone16ag0535 333 MobiDBLite consensus disorder prediction 215 231 - -
Cone16ag0535 333 CDD bHLH_AtIND_like 237 299 - -
Cone16ag0535 333 MobiDBLite consensus disorder prediction 152 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1041 Cone-Chr10:7267596 Cone16ag0535 Cone-Chr16:7353606 2.53E-20 dispersed
Cone16ag0535 Cone-Chr16:7353606 Cone4ag1582 Cone-Chr4:12098263 5.39E-16 dispersed
Cone16ag0535 Cone-Chr16:7353606 Cone12ag1048 Cone-Chr12:8728788 2.23E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44949 PF00400 WD40 4.60E-05 CL0186 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0535 - - - 0.0