Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0543 ATGTCTCTACAAAACATTGGTGCCAGTAACAGTGATGATGCCTTTTATAGGTATAAGATGCCCAGAATGGTTACTAAAATTGAGGGCCGAGGAAATGGTATCAAGACTAATATAGTCAACATGGTTGATATTGCAAAGGCTTTAGCAAGGCCTGCCTCATACACCACCAAGTATTTTGGCTGTGAACTTGGAGCTCAGTCAAAGTTTGATGAGAAAACTGGAACATCTCTTGTTAATGGGGCCCACGACACTCCAAAGCTAGCTGGCCTTCTTGAGAACTTCATTAAGAAGTATGTCCAGTGCTATGGCTGTGGAAACCCAGAAACAGAGATTTTGATCACCAAAACCCAGATGGTTCAGTTGAAGTGTGCGGCTTGTGGTTTTGTATCTGATGTGGATATGAGAGACAAACTTACCAGTTTCATCCTCAAGAATCCACCTGAACAGAAGAAAGGATCAAAAGACAAGAAAGCAATGAGAAGGGCAGAAAAGGAGCGACTCAAGGAAGGTGAGGCAGCTGATGAGGAGCAGAAGAAGGTAAAGAAAGATACCAAGAAGAAGACCACTTCCTCCACAAAGGTTAGCTCTTCAAAGAAGAAAGCAAGTGGTTCTGATGAAGACCGTGTGTCACCTGCTCACAGTCAAGCTGATGAAAAGGAAGAGGTTGAGGAAGATGAAGATGAAGATGATGTACAGTGGCAAACTGATACCTCATTGGAAGCAGCTAGGCAAAGGATTCAGGAGCAACTTAGTGCAGCGACTGCTGATATGGTCATGCTTTCTACAAACGAACCTGAGAATAAGGAAAGGCCCTCATCAACTGGAGAAGCAAAGAGCACAGACAATGGAAATGGGATTCAAACTGCTCAAGAAAAGCTTACTACTGAAATAAAAGCAAATCTGCAAAATGGTGTTTCTGCAAAACAACTGCTGGCCGTTCTAGAATCACTCTCTGGCTCTTCTCAGGAAAAGATGACTTCTCTTATTCAGGCTCTTTTTGATGGTGTTGAGAAAGGGTTTGCGAAGGAAGTGCTTAAGAAGAAGAACTACATAGCTGCTGCTCTTGCTCAGGAAGATGGATCACAGTTGTATTTGCTCCGATCCATTGAAGAACACTGTGTGAAATCAAGGCCTACCATGTTGAAGGAAGTTGCTCTTGTTTTGAAAGCTCTTTATGATGCAGATATATTAGAAGAGGAGTTTATATACCAATGGTATCAAGAAGGGTTGAAGGGAAGCAATAAACAGTCTCAGATATGGAAGAATTCTCAACCAGTCATCGATTGGCTTCAAAATGCGGAGTCGGAATCCGGCGAGGAGTGA 1323 42.78 MSLQNIGASNSDDAFYRYKMPRMVTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGAHDTPKLAGLLENFIKKYVQCYGCGNPETEILITKTQMVQLKCAACGFVSDVDMRDKLTSFILKNPPEQKKGSKDKKAMRRAEKERLKEGEAADEEQKKVKKDTKKKTTSSTKVSSSKKKASGSDEDRVSPAHSQADEKEEVEEDEDEDDVQWQTDTSLEAARQRIQEQLSAATADMVMLSTNEPENKERPSSTGEAKSTDNGNGIQTAQEKLTTEIKANLQNGVSAKQLLAVLESLSGSSQEKMTSLIQALFDGVEKGFAKEVLKKKNYIAAALAQEDGSQLYLLRSIEEHCVKSRPTMLKEVALVLKALYDADILEEEFIYQWYQEGLKGSNKQSQIWKNSQPVIDWLQNAESESGEE 440
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 7422316 7425256 - Conep16aG0290300.1 Cone16ag0543 454977
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0543 440 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 436 IPR045196 GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005092(PANTHER)|GO:0005829(PANTHER)|GO:0006413(InterPro)|GO:0071074(PANTHER)
Cone16ag0543 440 MobiDBLite consensus disorder prediction 148 189 - -
Cone16ag0543 440 Gene3D - 2 104 - -
Cone16ag0543 440 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743(InterPro)|GO:0006413(InterPro)
Cone16ag0543 440 Coils Coil 159 179 - -
Cone16ag0543 440 CDD W2_eIF5 291 437 - -
Cone16ag0543 440 Pfam eIF4-gamma/eIF5/eIF2-epsilon 361 440 IPR003307 GO:0005515(InterPro)
Cone16ag0543 440 ProSiteProfiles W2 domain profile. 275 440 IPR003307 GO:0005515(InterPro)
Cone16ag0543 440 SMART 542_3 348 436 IPR003307 GO:0005515(InterPro)
Cone16ag0543 440 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Cone16ag0543 440 MobiDBLite consensus disorder prediction 143 232 - -
Cone16ag0543 440 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743(InterPro)|GO:0006413(InterPro)
Cone16ag0543 440 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Cone16ag0543 440 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Cone16ag0543 440 SUPERFAMILY ARM repeat 290 434 IPR016024 -
Cone16ag0543 440 Gene3D - 286 440 - -
Cone16ag0543 440 MobiDBLite consensus disorder prediction 262 285 - -
Cone16ag0543 440 Gene3D - 105 145 - -
Cone16ag0543 440 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Cone16ag0543 440 MobiDBLite consensus disorder prediction 199 218 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0543 Cone-Chr16:7422316 Cone4ag1366 Cone-Chr4:11104946 2.44E-181 dispersed
Cone16ag0543 Cone-Chr16:7422316 Cone2ag0459 Cone-Chr2:2454466 4.33E-253 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0543 K03262 - vvi:100263898 639.417