Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone16ag0543 | ATGTCTCTACAAAACATTGGTGCCAGTAACAGTGATGATGCCTTTTATAGGTATAAGATGCCCAGAATGGTTACTAAAATTGAGGGCCGAGGAAATGGTATCAAGACTAATATAGTCAACATGGTTGATATTGCAAAGGCTTTAGCAAGGCCTGCCTCATACACCACCAAGTATTTTGGCTGTGAACTTGGAGCTCAGTCAAAGTTTGATGAGAAAACTGGAACATCTCTTGTTAATGGGGCCCACGACACTCCAAAGCTAGCTGGCCTTCTTGAGAACTTCATTAAGAAGTATGTCCAGTGCTATGGCTGTGGAAACCCAGAAACAGAGATTTTGATCACCAAAACCCAGATGGTTCAGTTGAAGTGTGCGGCTTGTGGTTTTGTATCTGATGTGGATATGAGAGACAAACTTACCAGTTTCATCCTCAAGAATCCACCTGAACAGAAGAAAGGATCAAAAGACAAGAAAGCAATGAGAAGGGCAGAAAAGGAGCGACTCAAGGAAGGTGAGGCAGCTGATGAGGAGCAGAAGAAGGTAAAGAAAGATACCAAGAAGAAGACCACTTCCTCCACAAAGGTTAGCTCTTCAAAGAAGAAAGCAAGTGGTTCTGATGAAGACCGTGTGTCACCTGCTCACAGTCAAGCTGATGAAAAGGAAGAGGTTGAGGAAGATGAAGATGAAGATGATGTACAGTGGCAAACTGATACCTCATTGGAAGCAGCTAGGCAAAGGATTCAGGAGCAACTTAGTGCAGCGACTGCTGATATGGTCATGCTTTCTACAAACGAACCTGAGAATAAGGAAAGGCCCTCATCAACTGGAGAAGCAAAGAGCACAGACAATGGAAATGGGATTCAAACTGCTCAAGAAAAGCTTACTACTGAAATAAAAGCAAATCTGCAAAATGGTGTTTCTGCAAAACAACTGCTGGCCGTTCTAGAATCACTCTCTGGCTCTTCTCAGGAAAAGATGACTTCTCTTATTCAGGCTCTTTTTGATGGTGTTGAGAAAGGGTTTGCGAAGGAAGTGCTTAAGAAGAAGAACTACATAGCTGCTGCTCTTGCTCAGGAAGATGGATCACAGTTGTATTTGCTCCGATCCATTGAAGAACACTGTGTGAAATCAAGGCCTACCATGTTGAAGGAAGTTGCTCTTGTTTTGAAAGCTCTTTATGATGCAGATATATTAGAAGAGGAGTTTATATACCAATGGTATCAAGAAGGGTTGAAGGGAAGCAATAAACAGTCTCAGATATGGAAGAATTCTCAACCAGTCATCGATTGGCTTCAAAATGCGGAGTCGGAATCCGGCGAGGAGTGA | 1323 | 42.78 | MSLQNIGASNSDDAFYRYKMPRMVTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGAHDTPKLAGLLENFIKKYVQCYGCGNPETEILITKTQMVQLKCAACGFVSDVDMRDKLTSFILKNPPEQKKGSKDKKAMRRAEKERLKEGEAADEEQKKVKKDTKKKTTSSTKVSSSKKKASGSDEDRVSPAHSQADEKEEVEEDEDEDDVQWQTDTSLEAARQRIQEQLSAATADMVMLSTNEPENKERPSSTGEAKSTDNGNGIQTAQEKLTTEIKANLQNGVSAKQLLAVLESLSGSSQEKMTSLIQALFDGVEKGFAKEVLKKKNYIAAALAQEDGSQLYLLRSIEEHCVKSRPTMLKEVALVLKALYDADILEEEFIYQWYQEGLKGSNKQSQIWKNSQPVIDWLQNAESESGEE | 440 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 7422316 | 7425256 | - | Conep16aG0290300.1 | Cone16ag0543 | 454977 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone16ag0543 | 440 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR | 3 | 436 | IPR045196 | GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005092(PANTHER)|GO:0005829(PANTHER)|GO:0006413(InterPro)|GO:0071074(PANTHER) | |
| Cone16ag0543 | 440 | MobiDBLite | consensus disorder prediction | 148 | 189 | - | - | |
| Cone16ag0543 | 440 | Gene3D | - | 2 | 104 | - | - | |
| Cone16ag0543 | 440 | SUPERFAMILY | Translation initiation factor 2 beta, aIF2beta, N-terminal domain | 10 | 101 | IPR016189 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Cone16ag0543 | 440 | Coils | Coil | 159 | 179 | - | - | |
| Cone16ag0543 | 440 | CDD | W2_eIF5 | 291 | 437 | - | - | |
| Cone16ag0543 | 440 | Pfam | eIF4-gamma/eIF5/eIF2-epsilon | 361 | 440 | IPR003307 | GO:0005515(InterPro) | |
| Cone16ag0543 | 440 | ProSiteProfiles | W2 domain profile. | 275 | 440 | IPR003307 | GO:0005515(InterPro) | |
| Cone16ag0543 | 440 | SMART | 542_3 | 348 | 436 | IPR003307 | GO:0005515(InterPro) | |
| Cone16ag0543 | 440 | Pfam | Domain found in IF2B/IF5 | 11 | 127 | IPR002735 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Cone16ag0543 | 440 | MobiDBLite | consensus disorder prediction | 143 | 232 | - | - | |
| Cone16ag0543 | 440 | SUPERFAMILY | Zinc-binding domain of translation initiation factor 2 beta | 98 | 133 | IPR016190 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Cone16ag0543 | 440 | FunFam | Eukaryotic translation initiation factor 5 | 1 | 104 | - | - | |
| Cone16ag0543 | 440 | FunFam | Eukaryotic translation initiation factor 5 | 105 | 145 | - | - | |
| Cone16ag0543 | 440 | SUPERFAMILY | ARM repeat | 290 | 434 | IPR016024 | - | |
| Cone16ag0543 | 440 | Gene3D | - | 286 | 440 | - | - | |
| Cone16ag0543 | 440 | MobiDBLite | consensus disorder prediction | 262 | 285 | - | - | |
| Cone16ag0543 | 440 | Gene3D | - | 105 | 145 | - | - | |
| Cone16ag0543 | 440 | SMART | eIF2Bneu4 | 15 | 129 | IPR002735 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Cone16ag0543 | 440 | MobiDBLite | consensus disorder prediction | 199 | 218 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone16ag0543 | Cone-Chr16:7422316 | Cone4ag1366 | Cone-Chr4:11104946 | 2.44E-181 | dispersed | |
| Cone16ag0543 | Cone-Chr16:7422316 | Cone2ag0459 | Cone-Chr2:2454466 | 4.33E-253 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone16ag0543 | K03262 | - | vvi:100263898 | 639.417 |