Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0553 ATGGACCTACCGCCGCCGGTGCCGCCACAAATTAAAACCGCCCCCACCACCCCTGCCAAAACGAAGCTCCGGCTGATGTGCAGCTATGGCGGTCAGATAGTAACACGACCTCACACCAAGTCTCTCTGCTACTTTGGAGGCGAAACTCGCATTGTGTCGATCAATCCTAAAACCACAACCTCTCTCTCCTGCTTTCTCTCTCATCTCGCCACCGTTCTCAAAGTCAAATCCTCTTTCGATATCAAGTACCAGCTTCCTCACCTCGAGCTTGACTCTCTCATCTCTGTTTTCTCTGACGAGGACCTCCTCCTCATGCTCGACGAGCACCTCCGCCTCTCCTCTTCCACTTCAACTGTTCCGTCTCGTATCAGATTGTTCCTCTTTGGCTCTGCTCGGAATGTTATTGATCATCCTAAGACTGAGGCGTGGTTCGTTGACGCTCTTAACAGCGCGGAGATTTTGCAGAGAGGGAGGGAATGCTTGGCGGCAGCTGGTTTCGGTGGGGAGGAGGGTGTGAGTAGGGGAGCTTTAGCGAGTGGAGTTGGTGGCTCAATGGCGGAATCGATTGTGTTGGAAACAAGTTCGTCTTTTGGCTCGTCTTCTTCTTCCTCGGCTTCTTTGACTAATCTGCCTCTCATCAAGACTCATGATGAAGATGATCCGACTGGAAAATTGGCTTCTCCTGAGACGATCTCAGCTCTAGCAAGACCACGTGAAGAACCAGCTGTTCTACCTTTTTCTGACCCAGCAATGGCAGATAGTGGGGTTAATGATCCTAGTGCTCGAATCCAAACACATAATCTCATCGGAGTTTCTCTATATGCTTCATCCTCACAGTCAAATCCCTTGCCACAACAGCAAATACAGTATGCTCAAAACCTTTTTGGAACATTACCAATTTCGTCCTACTATCCAGTCCATCAATCCACCCAGCTACTCCCTTATCAGCCAAACTATCTTTGCCCAGTTTACCTGGTTCCTTATAACCAGACCCAAATGACAAACCCTTACAGTTTCCCTATGCAGTACGGTCTAGTTGACAACTCGACCATAGCTCCAAATCCAGCCCCAGTACAACCAAACACTTCCTCCATACTTCCTCAAGTAACTTATAGAACAATTTTCTTAGAGAATCCTCCTTTGAATGAGCCTAGTGGTGAAACCCAGGCAACTGGTGCAATGTCCAAGGAAGGTTTGGCTTGTGGTATTGAGGTTGATGATGATCCTGCTCGTATTCAGATCTACAAATCTCAGCCTTCAGCACCTATTTATTCTTCTCAATTCCAGAACAATAGTAAAGCCACTATGGTACCGCTAAAAGAGGCCCTGGCTCAGTTGCATAAGGACAATATCAGGGACAATATCAAGCAATAG 1374 47.67 MDLPPPVPPQIKTAPTTPAKTKLRLMCSYGGQIVTRPHTKSLCYFGGETRIVSINPKTTTSLSCFLSHLATVLKVKSSFDIKYQLPHLELDSLISVFSDEDLLLMLDEHLRLSSSTSTVPSRIRLFLFGSARNVIDHPKTEAWFVDALNSAEILQRGRECLAAAGFGGEEGVSRGALASGVGGSMAESIVLETSSSFGSSSSSSASLTNLPLIKTHDEDDPTGKLASPETISALARPREEPAVLPFSDPAMADSGVNDPSARIQTHNLIGVSLYASSSQSNPLPQQQIQYAQNLFGTLPISSYYPVHQSTQLLPYQPNYLCPVYLVPYNQTQMTNPYSFPMQYGLVDNSTIAPNPAPVQPNTSSILPQVTYRTIFLENPPLNEPSGETQATGAMSKEGLACGIEVDDDPARIQIYKSQPSAPIYSSQFQNNSKATMVPLKEALAQLHKDNIRDNIKQ 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7464492 7466498 + Conep16aG0291400.1 Cone16ag0553 454987

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0553 457 SMART PB1_new 37 130 IPR000270 GO:0005515(InterPro)
Cone16ag0553 457 SUPERFAMILY CAD & PB1 domains 39 132 - -
Cone16ag0553 457 CDD PB1_UP2 26 128 - -
Cone16ag0553 457 PANTHER OS05G0427100 PROTEIN-RELATED 19 359 IPR053198 -
Cone16ag0553 457 Pfam PB1 domain 38 128 IPR000270 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0553 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0553 Cone-Chr16:7464492 Cone6ag1046 Cone-Chr6:6042278 7.56E-21 dispersed
Cone16ag0553 Cone-Chr16:7464492 Cone2ag0445 Cone-Chr2:2393629 1.37E-208 wgd
Cone16ag0553 Cone-Chr16:7464492 Cone6ag0422 Cone-Chr6:2051374 4.72E-30 wgd
Cone16ag0553 Cone-Chr16:7464492 Cone9ag0444 Cone-Chr9:2057793 3.01E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g846 Blo10g00198 Blo11g00362 . . . . . . . . . . . . . . Cpe13g01136 . . . . . . . Cla11g00731 Cam11g0766 Cec11g0754 Cco11g0754 Clacu11g1093 Cmu11g0947 Cre11g1212 . . Cone2ag0445 Cone16ag0553 . . . . . . . . . . . . . Cmo04g03109 Cmo15g00063 Cma04g02988 Cma15g00063 Car04g02876 . . Cpe01g02593 . . . . . . . . . . . . . . Lsi03g00420 . . .
Vvi17g275 . . . . . . . . . . Cma10g00310 . Car10g00295 Car11g00266 . . Cpe04g01389 . . . . . . . Cla06g01447 Cam06g1600 Cec06g1662 Cco06g1656 Clacu06g1565 Cmu06g1518 Cre06g2329 . Cone16ag0553 Cone13ag0315 . . . . . . . . . . . . . . Cmo10g00335 Cmo11g00297 . . . . . . . . . . . . . . . . . . . . Lsi06g01313 Csa01g00403 Chy02g02346 Cme02g01723
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007300 0 1 2 0 0 2 1 1 1 1 1 2 2 1 1 2 2 2 1 1 1 1 1 2 1 1 1 1 1 1 35