Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0554 ATGGTTTTTCAAGTGTTTTGCTTGCTTCTTCTTCTTTTCATATGCCATTCACTTTCACTTGTGACGGCTCTGAATGAAGAAGGGCTTGCTCTACTATCTTTCAAACAAAGCTTGATACATTACCCAGAAGCCAGCTTCCAGAGGTGGAATGCCTCAGATGAAAACCCATGTTTATGGCATGGAGTTACTTGCAGAGAAAGCAAAGTTGTATACCTCAATATTCCGAACAGGCGGCTTTCTGGGCCTCTTCATCCTTCTCTAGGAAAACTCTCCAAACTCCGCTATCTTGACCTTCGAAAGAATGGCTTCTACGGAAGCTTGCCAATTGAGCTCTTCAATGCGAAAAACCTGACAAGCTTGGTCCTTTCAGAAAATTCATTGACTGGGTCTCTTCCTTCTCAAATACGAAATCTCCACCATCTACAAACATTAGATCTCTCCAAAAATAAGTTGTCAGGTTCTCTTCCAGACGGGATTGGTACTAGTTTGAGTAAGCTGCAGAAACTCAATCTTTCCTTCAACAGGTTAAGTGGGTCAATCCCAAATGATATGGCAAATTTGTGTTGTACGAGAGGAATAATGGATTTGTCTCATAACATGTTCTCTGGTTCGATCCCATCAAGCCTTGGAAATCTACCTGAAAAATTTTATATCGATTTCAGCTACAATAATCTCACTGGAGCAATTCCACAAAAAGGCATCCTGCAAAACATAGGGCCCACTGCTTATAAAGGCAACACTTTTCTCTGTGGTCTCCCACTTGATGTTTCATGTTCATCATCAACAGTAGAATCTACTCTAAATCCGAACGGGGAGAAACAGAGAAGTCGTAAGTTTTCTGTGATTGCAATTGTCACAGGTGTTTCGGGTGCTGTTTTCATTTTTGGATTCTTGGCTTATTTTTGGTACAAAAAGAGAGGGGTGAATCCAAAACGTAAGTTTGAGAATCCGCGAAATCCAGAAAATATGGGAAAGTACAGATTTGTGAGAATGGATAAAGAAGCTGACTTTGATCTTGAAGGACTATTGAAAGGAACAGCTTATCTGGAGAGTAATGGTGGAAGAGGGGATATGTATAAAGTTGCACTTGAGAATGGAAGATGGTTAGCAGTAAGAAGCCTAGGAGATGAAAGTTTCCAAGGGTTTAAGGAATTCAAAAGTAAAGTGGAAGCAATTGGGAAAGCTAGACATCCAAATATAGTGAGGCTTCTAGCTTATTGCTGGTCTGTTGATGAGAAGCTTCTCGTCTATGATTATATACCAAATGGTGACCTTACCAATGCAATTCATGGGAAAGAAGATAGAGTATCATTTACCCCACTTTCTTGGCCTGATCGCTTGAGAATCATAAAAGGAATAGCAAGGGGCTTGGCTTATCTTCACAAATTCGGTACCAAAAAGAATATTCATGGAGATCTCAATCCTACCAATATCCTTCTTGGACACAACATGGAACCCTACATTTCAGATTTCGGTCTAGCTCGTCTCACTAATCTCATTGCCCAATCAGAACCAAGGTTAAACAATGGCCAACTCTCATACTATCAGGCCCCCGAGGCAACTTCTAAATCGGCAAAGCCATCACAGAAATGGGATGTTTACTCCTTCGGGATGATTTTACTAGAAATTACCTCTTCCAAGTTGCCCCTGATTCAAGTTGGTTCCTCTAAGATGGAGCTTGTAAGGTGGATCGAGATTGGCATTGATGATCCAAGGATTCTCTCCTGTGCATTAGACCCTTCCTTAGCTAGTCATGTACACAATGAAGAAGTTGCAGCTGTGCTTAAAATTGCTCTGGACTGTGTTCATAAGAGCCCGGAAAGGAGACCTTGTATGAGATTTGTCCATGATTTTCTAGACAAACTGCCTGCATCAAATGATTAA 1884 40.98 MVFQVFCLLLLLFICHSLSLVTALNEEGLALLSFKQSLIHYPEASFQRWNASDENPCLWHGVTCRESKVVYLNIPNRRLSGPLHPSLGKLSKLRYLDLRKNGFYGSLPIELFNAKNLTSLVLSENSLTGSLPSQIRNLHHLQTLDLSKNKLSGSLPDGIGTSLSKLQKLNLSFNRLSGSIPNDMANLCCTRGIMDLSHNMFSGSIPSSLGNLPEKFYIDFSYNNLTGAIPQKGILQNIGPTAYKGNTFLCGLPLDVSCSSSTVESTLNPNGEKQRSRKFSVIAIVTGVSGAVFIFGFLAYFWYKKRGVNPKRKFENPRNPENMGKYRFVRMDKEADFDLEGLLKGTAYLESNGGRGDMYKVALENGRWLAVRSLGDESFQGFKEFKSKVEAIGKARHPNIVRLLAYCWSVDEKLLVYDYIPNGDLTNAIHGKEDRVSFTPLSWPDRLRIIKGIARGLAYLHKFGTKKNIHGDLNPTNILLGHNMEPYISDFGLARLTNLIAQSEPRLNNGQLSYYQAPEATSKSAKPSQKWDVYSFGMILLEITSSKLPLIQVGSSKMELVRWIEIGIDDPRILSCALDPSLASHVHNEEVAAVLKIALDCVHKSPERRPCMRFVHDFLDKLPASND 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7466643 7468823 - Conep16aG0291500.1 Cone16ag0554 454988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0554 627 Gene3D Transferase(Phosphotransferase) domain 1 421 627 - -
Cone16ag0554 627 Gene3D Ribonuclease Inhibitor 192 262 IPR032675 -
Cone16ag0554 627 PANTHER OS05G0588300 PROTEIN 161 622 IPR050994 -
Cone16ag0554 627 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 135 258 - -
Cone16ag0554 627 FunFam Leucine-rich repeat receptor-like kinase 27 134 - -
Cone16ag0554 627 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Cone16ag0554 627 Pfam Leucine Rich Repeat 165 187 IPR001611 GO:0005515(InterPro)
Cone16ag0554 627 Pfam Leucine Rich Repeat 194 212 IPR001611 GO:0005515(InterPro)
Cone16ag0554 627 ProSiteProfiles Protein kinase domain profile. 344 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0554 627 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515(InterPro)
Cone16ag0554 627 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515(InterPro)
Cone16ag0554 627 Gene3D Ribonuclease Inhibitor 24 191 IPR032675 -
Cone16ag0554 627 SMART LRR_typ_2 138 162 IPR003591 -
Cone16ag0554 627 SMART LRR_typ_2 163 187 IPR003591 -
Cone16ag0554 627 SMART LRR_typ_2 90 114 IPR003591 -
Cone16ag0554 627 SUPERFAMILY Protein kinase-like (PK-like) 352 620 IPR011009 -
Cone16ag0554 627 SUPERFAMILY L domain-like 26 254 - -
Cone16ag0554 627 Gene3D Phosphorylase Kinase; domain 1 351 420 - -
Cone16ag0554 627 PRINTS Leucine-rich repeat signature 141 154 - -
Cone16ag0554 627 PRINTS Leucine-rich repeat signature 163 176 - -
Cone16ag0554 627 Pfam Protein tyrosine and serine/threonine kinase 365 618 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0554 Cone-Chr16:7466643 Cone2ag0444 Cone-Chr2:2392127 6.23E-145 dispersed
Cone13ag0803 Cone-Chr13:7406610 Cone16ag0554 Cone-Chr16:7466643 2.66E-112 wgd
Cone16ag0554 Cone-Chr16:7466643 Cone19ag0808 Cone-Chr19:6465061 1.12E-113 wgd
Cone16ag0554 Cone-Chr16:7466643 Cone2ag0443 Cone-Chr2:2389811 2.53E-35 wgd
Cone16ag0554 Cone-Chr16:7466643 Cone6ag0425 Cone-Chr6:2063811 3.83E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82213 PF00515 TPR_1 1.40E-09 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0554 - - - 0.0