Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0560 ATGTCTCTCCTCTTGATCATCACCATAACCATCCTCTCAATCCAGATCCCACCATCTATCTCCTTAGACGATGCAGAAAAATATAAAAATTGCAGCACAACTTTCAGATGTGGAGATTTAGAGGTGGACCTAGGCTACCCATTCTCGGGCTCGACCCGACCCTCATACTGCGGCCACCCGGGCTTCAACCTCGCCTGTAGTACTGGGTCCGCACCTATAATCACAATCAACTCGATAGACTATATAATAATCGATGTTCATAACACCTCACAGACGATCGAAATCGCGAGCTCAAATTACTACGACAACCTTTGCCCGTCAAAACTCATAGACACCACTATTGATCTCTCCCTCTTTAACTACACTTCTAGTGCAGTGAACCTCACCCTACTCTATAACTGCCCGGCTTCTTTTATTTCTAATCATGGTTACTTCACCTGCTCGACGGACACTAAAGTCGTGATACTGCCTGACTATAATTTTCCGACACTGACAAGTGGTTGCACAGAAGTGTTTGTGACCATTTCTTCATCGGAAAACTCAACTGTTTTGGCGAATCCTACAAACGACACATTGCTTGAAGCTATTGATGCTGGGTTTGAATTGCAGTGGAAGATAGATAATGAGGTTTGCAATGAATGTAAAAACTCTGGTGGAGGGTGTGGTTGGAACACAAGTGCAGATGCTTTTGCTTGTTATTGTGAGAAGGGAGCCTTTCCATCTACTTGTGGAGCAGGGAACAAGAGTACGAACAATACAGCCCTTATAGCAGGGGTATCAGCTGGAGCTGTTGGAATTGTTGTGCTATTGCTCGGCTTTTGGATTTGCGTAATAAGAAAAAAGAAGAAGATAAAAGTACTGAAATCTGTAGGCAAAGACAGTTCTTCACCTCCTTCAACTGTAGTCGCTTCTACTCCCATTATTGATTTCTCTAGAAGCATTCCTTCTTACCCGTATTCAAAATCCGACCTCGAAAAGGGCAGCACGTACTTCGGAACCCGGATCTTCAGCTACGAAGAACTCATGGAAGCCACTGAAAATTTTCACCCTTCAAAACAACTTGGAGATGGAGGATTTGGCACTGTTTACTATGGTGAGCTCAAGGATGGACAGGTAGTTGCGGTGAAGAGATTGTACGAGAACAATTTCAAACGAGTCGAGCAGTTCATGAACGAAGTAGAAATCTTAACACGTCTACAACACAAGAACCTAGTGAAGCTTCACGGGTGCACTTCAAAACATAGTAGAGAACTCCTCCTTGTCTATGAATACATTTCGAACGGAACAGTAGCAGACCATCTTCATAAAAAGCAAACAAGTTCCGATAAGCCCCGTTTGCTCTCCTGGTCGATCCGGTTAAGCATTGCCATAGAGACGGCAGAGGCTTTGGCTTATCTCCATAGATCGGATACTATTCACCGAGACGTGAAAACCAACAACATTTTACTAGAAGATAATTTTCGTGTCAAAGTGGCTGATTTCGGTTTATCTAGATTGTTCCCTACTGATGTCACCCACGTGTCAACGGCCCCACAGGGGACACCCGGTTACGTTGACCCAGAGTATTACCAGTGTTACAGGCTGACTGATAAGAGTGATGTTTATAGTTTTGGAGTGGTTCTGATCGAGCTTTTATCGTCATTACAAGCCGTGGATACAAACAGGCACAGGCAAGATATCAATTTAGCCAGCATGGCGGTGAACAAGATTGTGAACCATCAATTGAACGAGTTGGTGGACCCGCGTCTCGGGTTTGAGAATGATGAGGTTGTGAAAAAGGCGGCTACTTCAGTGGCGGCTTTGGCTTTTCAGTGTTTGCAACAAGAGAGGGAGATGAGACCGACTATGGAGGAAGTGTTGCAGGGTTTGAGGGAGATCGAAATGGAACAGGCAAGCAGTTTGAAAGCAGAAGTGCTGGATATTTGTACGGATGATGATATCGGGCTTTTGAAGAGTAGGCCTCCCCCTCTCTCCCCGGATTCTGTTGTGACGGAGAATCTGGTTAGCAGCTCCACTACGTCTCTTAGTTCCTATTAG 2037 44.87 MSLLLIITITILSIQIPPSISLDDAEKYKNCSTTFRCGDLEVDLGYPFSGSTRPSYCGHPGFNLACSTGSAPIITINSIDYIIIDVHNTSQTIEIASSNYYDNLCPSKLIDTTIDLSLFNYTSSAVNLTLLYNCPASFISNHGYFTCSTDTKVVILPDYNFPTLTSGCTEVFVTISSSENSTVLANPTNDTLLEAIDAGFELQWKIDNEVCNECKNSGGGCGWNTSADAFACYCEKGAFPSTCGAGNKSTNNTALIAGVSAGAVGIVVLLLGFWICVIRKKKKIKVLKSVGKDSSSPPSTVVASTPIIDFSRSIPSYPYSKSDLEKGSTYFGTRIFSYEELMEATENFHPSKQLGDGGFGTVYYGELKDGQVVAVKRLYENNFKRVEQFMNEVEILTRLQHKNLVKLHGCTSKHSRELLLVYEYISNGTVADHLHKKQTSSDKPRLLSWSIRLSIAIETAEALAYLHRSDTIHRDVKTNNILLEDNFRVKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPEYYQCYRLTDKSDVYSFGVVLIELLSSLQAVDTNRHRQDINLASMAVNKIVNHQLNELVDPRLGFENDEVVKKAATSVAALAFQCLQQEREMRPTMEEVLQGLREIEMEQASSLKAEVLDICTDDDIGLLKSRPPPLSPDSVVTENLVSSSTTSLSSY 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7508271 7511614 + Conep16aG0292100.1 Cone16ag0560 454994

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0560 678 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 672 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cone16ag0560 678 Gene3D Phosphorylase Kinase; domain 1 320 424 - -
Cone16ag0560 678 SMART serkin_6 348 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0560 678 FunFam Wall-associated receptor kinase-like 20 425 636 - -
Cone16ag0560 678 ProSiteProfiles Protein kinase domain profile. 348 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0560 678 Pfam Wall-associated receptor kinase galacturonan-binding 31 96 IPR025287 GO:0030247(InterPro)
Cone16ag0560 678 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524(InterPro)
Cone16ag0560 678 Gene3D Transferase(Phosphotransferase) domain 1 425 646 - -
Cone16ag0560 678 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 324 424 - -
Cone16ag0560 678 Pfam Protein tyrosine and serine/threonine kinase 351 621 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0560 678 MobiDBLite consensus disorder prediction 650 678 - -
Cone16ag0560 678 MobiDBLite consensus disorder prediction 662 678 - -
Cone16ag0560 678 SUPERFAMILY Protein kinase-like (PK-like) 329 626 IPR011009 -
Cone16ag0560 678 Pfam Wall-associated receptor kinase C-terminal 165 236 IPR032872 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0560 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0309 Cone-Chr13:2440299 Cone16ag0560 Cone-Chr16:7508271 4.46E-174 dispersed
Cone16ag0560 Cone-Chr16:7508271 Cone2ag0439 Cone-Chr2:2358824 0 dispersed
Cone16ag0560 Cone-Chr16:7508271 Cone16ag0561 Cone-Chr16:7512546 9.71E-197 tandem
Cone11ag0305 Cone-Chr11:1489818 Cone16ag0560 Cone-Chr16:7508271 4.21E-211 wgd
Cone13ag0807 Cone-Chr13:7428880 Cone16ag0560 Cone-Chr16:7508271 9.51E-122 wgd
Cone16ag0560 Cone-Chr16:7508271 Cone18ag1190 Cone-Chr18:8501767 4.40E-205 wgd
Cone16ag0560 Cone-Chr16:7508271 Cone19ag0814 Cone-Chr19:6491436 2.77E-118 wgd
Cone16ag0560 Cone-Chr16:7508271 Cone2ag0437 Cone-Chr2:2350642 2.36E-121 wgd
Cone16ag0560 Cone-Chr16:7508271 Cone6ag0428 Cone-Chr6:2080564 4.52E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g289 . . . Bda15g00513 . Bpe13g00359 Bma06g00049 . Cmo13g01055 . Cma10g00308 Cma11g00286 Car10g00292 Car11g00260 . . . . . . . . . . Cla06g01453 . . . . . . Cone11ag0305 Cone18ag1190 Cone2ag0439 Cone16ag0560 Lsi02g00194 Csa01g00680 . Cme12g01864 . . . . . Bpe15g00530 Bma03g00899 Bma08g00058 . Cmo10g00329 Cmo11g00288 Cma13g01013 . Car13g00846 . . . Bhi08g01255 . . . . . . Cla04g01079 . . . . . . Lsi06g01317 Csa01g00398 Chy02g02350 Cme02g01727
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000747 2 6 3 2 2 2 3 2 2 4 1 3 3 1 5 3 2 5 3 2 3 1 2 3 5 3 2 2 6 1 84
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82214 None None None None Cone PK