Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0561 ATGTCTCTCCTCTTGATCATCACCATAACCATCCTCTCAATCCAGATCCCACCATCTATCTCCTTAGACGATGCAGAAAAATATAAAAATTGCAGCACAACTTTCAGATGTGGAGATTTAGAGGTGGACCTAGGCTACCCATTCTCGGGCTCGACCCGACCCTCATACTGCGGCCACCCGGGCTTCAACCTAATATGCAGTACTGGGTCCGATCCTATAATCACAATCAACTCGATAGACTATAGAATAATCAATGTTGATAACGCCACACAGACGATCAAAATCGCGAGCTCAAATTACTACGACGACCTTTGCCCGTCAAAGCTCATAGACACCACTATTGATCTCTCCCTCTTTAACTACACTTCTAGTGCAGTGAACCTCACCCTACTCTATAACTGCCCGGCTTCTTTTATTTCTAATCATGATTACTTCACCTGCTCGACGGACACTATCGTCGTGATACTGCCTGACTATAATTTTCCGACACTGACAAGTGGTTGCACAGAAGTGTTTGTGACCATTTCTTCATCGGGAAACTCAACTGTTTGGGCGAATCCTACAAACGACACAGTGCTTGATGCTTTTGATGCTGGGTTTGAATTGCAGTGGAAGATAGATAATGAGGTTTGTAATGAATGTATAAACTTTGGTGGAGGGTGTGGTTGGGACACAAGTGCAGATGCTTTTGCTTGTTATTGTGAGAAGGGAGCCGTTCGATCTACTTGTGGAGCAGTACCAGGCCGTAGCACCGGGCCGCAAGACAAGAAGACATTCTTATTCATCACATTATCTACACTTATTCCATTCTTTTTCTTACCAGTCTTTCTCATCATGTGTCGCCTTAGAATGAGAAAACGCAGTACAAAAGCTAAGAATCTAACAGCTATAGGAGATTTTTTTACCAGCAGTGCTCCTAATCTGCAAATCTTTAGTCTTGCTGACATTGACATAGCCACCAATAAGTTCGCAATGGAGAATAAGCTTGGCCATGGTGGTTATGGCCCTGTTTACAAGGGGTTGTTATCTAATGAACAAGAAGTAGCAGTGAAAAAGCTTTCAAAATCTTCGATGCAAGGTTTCGAAGAATTCAAGAATGAAGTTATTCTTACTGCAAAACTGCAACATGTTAATCTTGCGAGAGTTCTTGGATTTTGCATCGACCAAGATGAACAAATGCTTGTCTATGAGTACATGCCCAATAAGAGCTTGGATCTCTATCTCTTCGATCCTATAAGAAGAATGGAAATAGATTGGAGAAAGCGTGCTCAAATTATTGATGGAATTATTCAAGGGCTTCTATATCTCCAAGAGTACTCAAGTTTTATAATAATTCACAGAGACTTGAAGGCCAGCAATATCTTACTGGATCATGACCTCAAGCCGAAAATCTCGGATTTTGGAATGGCTAAAATCTTCAACAAGGACGCGCACGAAGCGATTACAAGCCAGTTTGCTGGAACATACGGTTATGTTCCGCCTGAATATGTCAAACGAGGACTATACTCGAGAAAGACGGATGTTTATAGCTTTGGGGTTCTACTGTTGCAAATAATAAGTGGAAAGAAGAATGGTTGTTTATATGGCTCGGATGAAAATTTAAATCTTTCGGAATATGCATATGAGCTATGGAGAGAAGGACATGGAATGGAGTTTATGGACCCGTTTCTCGATGATACAAACTGTTCCTGCAAACTGATAACATGCCTACACATAGCTTTGTTATGTGTTCAGGAAGATGCAAATGATAGACCTTCCATGCTTGAAGTTTCCTCAATGCTAAAAAATGAGACAGTCTTGGTCCCGACGAAGGTGAACCAGCCTGCTTTTTCAAGAAGAAGAAATGAAGACGATGAAGACAAATGCACATTGCATATAGGAATCTGTTCGGTTAATGATGCAACAATGTCACGAGTACAAGGCAGATAG 1929 41.47 MSLLLIITITILSIQIPPSISLDDAEKYKNCSTTFRCGDLEVDLGYPFSGSTRPSYCGHPGFNLICSTGSDPIITINSIDYRIINVDNATQTIKIASSNYYDDLCPSKLIDTTIDLSLFNYTSSAVNLTLLYNCPASFISNHDYFTCSTDTIVVILPDYNFPTLTSGCTEVFVTISSSGNSTVWANPTNDTVLDAFDAGFELQWKIDNEVCNECINFGGGCGWDTSADAFACYCEKGAVRSTCGAVPGRSTGPQDKKTFLFITLSTLIPFFFLPVFLIMCRLRMRKRSTKAKNLTAIGDFFTSSAPNLQIFSLADIDIATNKFAMENKLGHGGYGPVYKGLLSNEQEVAVKKLSKSSMQGFEEFKNEVILTAKLQHVNLARVLGFCIDQDEQMLVYEYMPNKSLDLYLFDPIRRMEIDWRKRAQIIDGIIQGLLYLQEYSSFIIIHRDLKASNILLDHDLKPKISDFGMAKIFNKDAHEAITSQFAGTYGYVPPEYVKRGLYSRKTDVYSFGVLLLQIISGKKNGCLYGSDENLNLSEYAYELWREGHGMEFMDPFLDDTNCSCKLITCLHIALLCVQEDANDRPSMLEVSSMLKNETVLVPTKVNQPAFSRRRNEDDEDKCTLHIGICSVNDATMSRVQGR 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7512546 7525906 + Conep16aG0292200.1 Cone16ag0561 454995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0561 642 Gene3D Transferase(Phosphotransferase) domain 1 399 608 - -
Cone16ag0561 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0561 642 ProSiteProfiles Protein kinase domain profile. 323 599 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0561 642 Pfam Wall-associated receptor kinase galacturonan-binding 31 96 IPR025287 GO:0030247(InterPro)
Cone16ag0561 642 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 213 610 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone16ag0561 642 SMART serkin_6 323 600 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0561 642 Pfam Wall-associated receptor kinase C-terminal 165 236 IPR032872 -
Cone16ag0561 642 Pfam Protein kinase domain 325 590 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0561 642 SUPERFAMILY Protein kinase-like (PK-like) 304 594 IPR011009 -
Cone16ag0561 642 FunFam Uncharacterized protein 301 398 - -
Cone16ag0561 642 Gene3D Phosphorylase Kinase; domain 1 299 398 - -
Cone16ag0561 642 FunFam Uncharacterized protein 399 603 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0561 Cone-Chr16:7512546 Cone2ag0437 Cone-Chr2:2350642 0 dispersed
Cone16ag0561 Cone-Chr16:7512546 Cone16ag0563 Cone-Chr16:7528819 1.18E-248 proximal
Cone16ag0560 Cone-Chr16:7508271 Cone16ag0561 Cone-Chr16:7512546 9.71E-197 tandem
Cone16ag0561 Cone-Chr16:7512546 Cone16ag0562 Cone-Chr16:7527386 9.88E-116 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82215 PF00450 Peptidase_S10 3.00E-140 CL0028 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0561 - - - 0.0