Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0563 ATGAGAAAACGCAGCACGAAAGCTAAGAATCTAACAGCTATAGCAGATTTTTTTAACAGAAGTGCTCCTAATCTGCAAATCTTTAGTCTTGCTGACATTGACATAGCCATCAATAAGTTTGCAATGGAGAATAAGCTTGGCCATGGTGGTTATGGCCCTGTTTACAAGGGGTTGTTATCTAATGGACAAGAAGTAGCAGTGAAAAAGCTTTCAAAATCTTCGATGCAAGGTTTCGAAGAATTCAAGAATGAAGTTATTCTTACTGCAAAACTGCAACATGTTAATCTTGCGAGAGTTCTTGGATTTTGCATCGACCAAGATGAACAAATGCTTGTCTATGAGTACATGCCCAATAAGAGCTTGGATCTCTATCTCTTCGATCCTATAAGAAGAATGGAAATAGATTGGAGAAAGCGTGCTCAAATTATTGATGGAATTATTCAAGGGCTTCTATATCTCCAAGAGTACTCAAGTTTTATAATAATTCACAGAGACTTGAAGGCCAGCAATATTTTACTGGATCATGACCTCAAGCCGAAAATCTCGGATTTTGGAATGGCTAAAATCTTCAACAAGGACGCGCACGAAGCGATTACAAGCCAGTTTGCTGGAACATACGGTTATGTTCCGCCTGAATATGTCAAACGAGGACTATACTCGAGAAAGACGGATGTTTATAGCTTTGGGATTCTACTGTTGCAAATCATAAGTGGAAAGAAGAATGGTTGTTTATATGGCTCGGATGAAAATTTAAATCTTTCGGAATATGCATATGAGCTATGGAGAGAAGGACATGGAATGGAGTTTATGGACCCGTTTCTCGATGATACAAACTGTTCCTCCAAACTGATAACATGCCTACACATAGCTTTGTTATGTGTTCAGGAAGATGCAAATGATAGACCTTCCATGCTTGAAGTTTCTTCAATGCTAAAAAATGAGACAGTCTTGGTCCCGATGAATCTGAACCAGCCTGCTTTTTCAAGAAGAAGAAATGAAGACGATGAAAACAAATGCACATTGCATACAGAAATCAGGTCGGTTAATGATGCAACAATGTCACCAGTGCAAGGCAGATAG 1080 38.89 MRKRSTKAKNLTAIADFFNRSAPNLQIFSLADIDIAINKFAMENKLGHGGYGPVYKGLLSNGQEVAVKKLSKSSMQGFEEFKNEVILTAKLQHVNLARVLGFCIDQDEQMLVYEYMPNKSLDLYLFDPIRRMEIDWRKRAQIIDGIIQGLLYLQEYSSFIIIHRDLKASNILLDHDLKPKISDFGMAKIFNKDAHEAITSQFAGTYGYVPPEYVKRGLYSRKTDVYSFGILLLQIISGKKNGCLYGSDENLNLSEYAYELWREGHGMEFMDPFLDDTNCSSKLITCLHIALLCVQEDANDRPSMLEVSSMLKNETVLVPMNLNQPAFSRRRNEDDENKCTLHTEIRSVNDATMSPVQGR 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7528819 7529898 + Conep16aG0292400.1 Cone16ag0563 454997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0563 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0563 359 FunFam Uncharacterized protein 116 320 - -
Cone16ag0563 359 Pfam Protein kinase domain 42 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0563 359 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 24 327 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone16ag0563 359 Gene3D Transferase(Phosphotransferase) domain 1 116 323 - -
Cone16ag0563 359 ProSiteProfiles Protein kinase domain profile. 40 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0563 359 SUPERFAMILY Protein kinase-like (PK-like) 22 311 IPR011009 -
Cone16ag0563 359 FunFam Uncharacterized protein 17 115 - -
Cone16ag0563 359 SMART serkin_6 40 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0563 359 Gene3D Phosphorylase Kinase; domain 1 2 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0563 Cone-Chr16:7528819 Cone2ag0437 Cone-Chr2:2350642 1.80E-223 dispersed
Cone16ag0561 Cone-Chr16:7512546 Cone16ag0563 Cone-Chr16:7528819 1.18E-248 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82216 PF01494 FAD_binding_3 9.90E-06 CL0063 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0563 - - - 0.0