Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0580 ATGGCTTCCTCTATGATTTCCTCGGCTACCGTAGCCACCGTGAGCTGTGCCACCCCGGCCCAGGCCACCATGGTTGCACCCTTCACCGGGCTCAAGTCCACCGCAGCTTTCCCAGTCACCCGCAAGAGCAACAATGACATCACCTCTCTCCCCAGCAACGGTGGAAGAGTCCAATGCATGCAGGTGTGGCCACCAATTGGTTTGAAGAAGTACGAGACTCTTTCCTACCTCCCACCACTTTCAACTGAATCATTGGCCAAGGAAGTTGACTACCTTCTTAGAAATGGATGGGTTCCTTGTCTGGAATTCGAGACCGAGCACGGATTTGTGTACCGTGAGCACCACAGGTCACCGGGGTACTATGACGGACGTTACTGGACAATGTGGAAGCTTCCCATGTTCGGATGCACCGACTCGGCCCAAGTGATAAAGGAGCTTGACGAAGCCAAGAAAGCGTACCCTAATGCCTTCATCCGGATCATCGGATTCGACAACAAGCGCCAAGTCCAGTGTGTCAGTTTCATTGCCTACAAGCCACCAGGATACTAA 549 53.19 MASSMISSATVATVSCATPAQATMVAPFTGLKSTAAFPVTRKSNNDITSLPSNGGRVQCMQVWPPIGLKKYETLSYLPPLSTESLAKEVDYLLRNGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDSAQVIKELDEAKKAYPNAFIRIIGFDNKRQVQCVSFIAYKPPGY 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7599707 7601168 - Conep16aG0294100.1 Cone16ag0580 455014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0580 182 Pfam Ribulose bisphosphate carboxylase, small chain 71 179 IPR000894 -
Cone16ag0580 182 CDD RuBisCO_small 69 179 IPR000894 -
Cone16ag0580 182 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC 1 180 IPR024681 -
Cone16ag0580 182 Gene3D Ribulose bisphosphate carboxylase, small subunit 60 182 IPR036385 -
Cone16ag0580 182 SUPERFAMILY RuBisCO, small subunit 60 181 IPR036385 -
Cone16ag0580 182 SMART RuBisCO_small_2_a 70 179 IPR000894 -
Cone16ag0580 182 Pfam Ribulose-1,5-bisphosphate carboxylase small subunit 2 46 IPR024680 -
Cone16ag0580 182 FunFam Ribulose bisphosphate carboxylase small chain, chloroplastic 60 182 - -
Cone16ag0580 182 PRINTS RuBisCO small subunit signature 21 38 IPR024681 -
Cone16ag0580 182 PRINTS RuBisCO small subunit signature 97 112 IPR024681 -
Cone16ag0580 182 PRINTS RuBisCO small subunit signature 119 148 IPR024681 -
Cone16ag0580 182 PRINTS RuBisCO small subunit signature 48 66 IPR024681 -
Cone16ag0580 182 PRINTS RuBisCO small subunit signature 69 95 IPR024681 -
Cone16ag0580 182 PRINTS RuBisCO small subunit signature 153 179 IPR024681 -
Cone16ag0580 182 Hamap Ribulose bisphosphate carboxylase small subunit [cbbS]. 69 180 IPR000894 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0580 K01602 - - rcu:8272344 328.946
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0580 Cone-Chr16:7599707 Cone2ag0716 Cone-Chr2:32789302 1.52E-62 dispersed
Cone13ag0827 Cone-Chr13:7519524 Cone16ag0580 Cone-Chr16:7599707 1.44E-44 wgd
Cone16ag0580 Cone-Chr16:7599707 Cone19ag0832 Cone-Chr19:6583918 8.19E-111 wgd
Cone16ag0580 Cone-Chr16:7599707 Cone2ag0422 Cone-Chr2:2278063 1.34E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g324 . Blo16g00138 . . . Bpe13g00347 Bma06g00038 . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0716 Cone16ag0580 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006736 0 1 2 2 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38