Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0596 ATGGCCTTTTTCGCAACCTTGTGCTGTGGAGCTGGTTCGGACCGGGAAACAAGAGATCAGAAGAATACAGACGGCCAGAAAACGTGGAGGGTCTTTACGTTGAAGGAGCTTCAACGGGCGACTAACAATTTCAGTTATGATAACAAGGTCGGAGAAGGCGGATTTGGTAGTGTCTACCGGGGTCAGCTTCGGGATGGATCACAAATTGCAGTGAAGAGACTGAAAGCATGGAGCGACAAGGCGAATCTCGAGTTTTCCATTGAAGTTGAGATATTAGCTCGAGTTCAGCACAAGAATCTTCTAAGTCTGCAGGGCTATTGTGCTGAAGGCCGAGAGCGTTTAATTGTATATGACTACATGCCCAATCTGAGTTTACATTCTCATCTTCACGGCCGCCACTCGATTCAATCTCTCCTTAATTGGGAACGTCGGATGAAAATTGCAATCGGGTCCGCAGAGGGACTAGCGTACCTTCACAACGAAGCAACCCCACATATCCTTCACCGAGACATCAAGGCTAATAACGTACTAATAGACCAGGATTTCGAAGCTCAAGTTGCTGATTTCGGATTTGCAAAACTTATCCCAGACGGTGTCACACATGTCACGACAAAAGTCAAGGGCACACTTGGTTATATTGCTCCGGAGTATGCTATGTTCGGAAAAGCATCTGAGAATTGTGATGTTTATAGTTTCGGAATTCTCCTTCTCGAACTTATAAGCGGGAGAAGACCGATAGATCGAGTGAGTGATACAATGAAACAAATGATTGGGGATTGGGCCTTGCCATTGGCATGTGAGGGGAAGTTTGATGAAATGGTGGATCCTAGGTTGAATGGGAAGTATGTAAGGGAAGAGGTGAAAAGGGTTATTCTTGTTGCACTAGTTTGTGCTCAAATTCAGCGAGAGAGAAGGCCAACCATGGTTGAGGTGGTCAAGCTAGTGAAAGGAGAGTCTAAGGACATGTTTGCTAATGTAGAAGATGATGAATTGTTTAAGATTGATAATCATGTTGCTCCTCGTGAAGAAGACGACATAGAAGTTACGGAAAATAGCTCGGATTTTATATCCGATGAGAAGGAGTCAATAGAGTTATCTAGGACTTCTGGGTGA 1113 44.65 MAFFATLCCGAGSDRETRDQKNTDGQKTWRVFTLKELQRATNNFSYDNKVGEGGFGSVYRGQLRDGSQIAVKRLKAWSDKANLEFSIEVEILARVQHKNLLSLQGYCAEGRERLIVYDYMPNLSLHSHLHGRHSIQSLLNWERRMKIAIGSAEGLAYLHNEATPHILHRDIKANNVLIDQDFEAQVADFGFAKLIPDGVTHVTTKVKGTLGYIAPEYAMFGKASENCDVYSFGILLLELISGRRPIDRVSDTMKQMIGDWALPLACEGKFDEMVDPRLNGKYVREEVKRVILVALVCAQIQRERRPTMVEVVKLVKGESKDMFANVEDDELFKIDNHVAPREEDDIEVTENSSDFISDEKESIELSRTSG 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7751145 7752731 + Conep16aG0295700.1 Cone16ag0596 455030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0596 370 PANTHER OS01G0750732 PROTEIN 24 335 IPR050885 -
Cone16ag0596 370 ProSiteProfiles Protein kinase domain profile. 44 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0596 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0596 370 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524(InterPro)
Cone16ag0596 370 SUPERFAMILY Protein kinase-like (PK-like) 25 314 IPR011009 -
Cone16ag0596 370 MobiDBLite consensus disorder prediction 342 370 - -
Cone16ag0596 370 Pfam Protein tyrosine and serine/threonine kinase 46 253 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0596 370 MobiDBLite consensus disorder prediction 353 370 - -
Cone16ag0596 370 Gene3D Phosphorylase Kinase; domain 1 9 119 - -
Cone16ag0596 370 FunFam PTI1-like tyrosine-protein kinase At3g15890 120 331 - -
Cone16ag0596 370 CDD STKc_IRAK 50 317 - -
Cone16ag0596 370 SMART serkin_6 44 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0596 370 Gene3D Transferase(Phosphotransferase) domain 1 120 332 - -
Cone16ag0596 370 FunFam PTI1-like tyrosine-protein kinase At3g15890 15 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0596 Cone-Chr16:7751145 Cone16ag0635 Cone-Chr16:7938966 3.97E-216 dispersed
Cone1ag1464 Cone-Chr1:56998299 Cone16ag0596 Cone-Chr16:7751145 5.45E-62 dispersed
Cone5ag0453 Cone-Chr5:1917985 Cone16ag0596 Cone-Chr16:7751145 2.89E-63 dispersed
Cone16ag0596 Cone-Chr16:7751145 Cone16ag0598 Cone-Chr16:7757238 2.26E-89 proximal
Cone13ag0880 Cone-Chr13:7810409 Cone16ag0596 Cone-Chr16:7751145 4.96E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82218 PF00487 FA_desaturase 1.20E-09 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0596 - - - 0.0