Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0598 ATGTCTTCTTCGCCTTCTACAAATTCTCCTCCTTCTCCATCTCCACCACCTTCAGCCTCCTCTTCCTCCCCACCACCCGATTCTCCTCCTCCACCATCGAAAAACCCTGATAACACTGCCAACTCACCTGATTCCTCCTCCCCTCCACCCCCTTCAAGCTCTTCAGCTCCACCTCCTCAATCTTCATCACCACCACCTCCTCCCTCCCCACCACTTTCACCTCCTCCATCCGAAACACCACCACCAAAAACATCACCGCCACCCCCTCCTCCAGCTGCTACCCCACCTTCACCGCCAGAATCTCCTCCACCTTCACCTCCATCTCCACCACCAACATCCCCACCATCCATTACTCCTCCTCCTGCTTCAAATCCACCGCCTCCCGATCCCTCACCCCCACCACCACCACCACCACCACTCGATTCTCCACCTCCTCACCCCACCCCCCCTCCTCCTGCTGCCACCCCACCACCCTCTCCAACTGCTTCACCTCCTCCACCTGATGTTTCTAGACCACCACCTTCTTCAAACTCTTCCCCTCCTCCACCCACAAAAAAGTCAACATCTCCTCCACCTCCTGTGCAAAGCCCTCAATCTGCACCACCACCACCACCTTCACCCTCACCTCCTAATTCCACATTGCCATCACCTCCTCCTTCGGTCCCCTCATCATCTCCACCACCTCCAAGCTCTTCTCCTGCTTCTCCAAGCAATTCATCAAGTGCAAGCCCTTCTAACTCGCCTTTATCTTCTGATCTTCCTGAAAAACCAACTGCAAAAACAACCACTGGTACTAATGTAGGATCGCCTTCACAAAAAGGAGGGTTAAGCCCTGGAACATATGCAGCCATTGCTACTGTGTTTGGGGTTCTACTGCTCAGTCTAGTTGTATTTTCTGTTTGGTTTGTTCAAAAACGAAAGAGGAGAAAAGGGTTGTACCATATTCCCTACAATGTGCCTTCTCCATTTTCCTCCTCCCAAAATTCAGATTCAATATTTCTAAAATCTCAATCACCATCTCCCCTAATAGGAAGCCATTCTGCTAGCGAAAAATACGTGTACTCTTCATCGGAGGCAGGAGGAGTAAGTAATAATTCGAGAGCATTTGCCTACGAAGAACTAGTAGAAGCCACAAGTGGATTTTCACCAGTCAAACTTTTGGGGGAAGGTGGGTTTGGTTGTGTATATAAAGGCACCCTATCAGATGGAAGAGAAATAGCCGTAAAACAGCTCAAAATAGGTGGTGGACAAGGGGAAAGGGAATTCAGAGCAGAAGTCGAGATTATTAGCCGTGTTCATCATCGCCATTTGGTCTCTCTGGTCGGTTATTGCATTTCCGAGTATCAGAGATTGCTTGTGTATGATTTTGTTCAGAACGATACTCTTCATCACCATCTTCATAGTGAAAACAGCCCCATTTTAGGCTGGGCGACTCGGGTTAGAATTGCTGCCGGTGCAGCTCGTGGAATTGCTTACCTGCACGAAGACTGCCATCCACGCATTATTCACAGGGATATTAAGTCGTCAAACATCCTGCTTGATGGCAACTTTGAAGCTCAGGTTGCTGATTTCGGGCTTGCAAAGTTAGCATCAGACACACATACACACGTGACTACCCGTGTTATGGGAACCTTTGGATACATGGCTCCGGAATATGCAACTAGTGGAAAATTAACCGACAAGTCCGATGTTTATTCTTATGGGGTTGTACTTTTGGAGCTTATTACTGGTCGCAAGCCTGTTGATTCCTCTCAACCCTTAGGTGATGAGAGCCTAGTTGAATGGGCTCGACCCTTACTTGCACAAGCTCTAGAAGACGAAAGGTTCGAAGAGTTGGCGGACCCCAAGCTAGATAATAACTATGTCGACTCTGAGATGTTCCGAATGATAGAAGCAGCAGCAGCTTGTGTCCGCCATTCAGCAATAAAACGGCCTCGGATGAGTCAGGTGGTGAGAGCCTTAGACTCTTTAGATGATACGACGGATATTGATAACGGGGTGAAACCGGGTCAAAGCGGGGTGTTTGATTCGGCTCAACAATCGGCCCAAATTCGAATGTTTCAAAGGATGGCATTTGGAAGTCAAGATTACAGTTCAGAATATATTGATCGGAGCAGAAGTCAGAGTAGTTGGAGGAGCAGAGAATCTGGAGAGCAGAGGAGTAGAGAGTTCGAGCATCGGAGTTCGTTTGCACCTCCCGTAAATCGATCTGTGTTATGGAACAACTGA 2229 48.63 MSSSPSTNSPPSPSPPPSASSSSPPPDSPPPPSKNPDNTANSPDSSSPPPPSSSSAPPPQSSSPPPPPSPPLSPPPSETPPPKTSPPPPPPAATPPSPPESPPPSPPSPPPTSPPSITPPPASNPPPPDPSPPPPPPPPLDSPPPHPTPPPPAATPPPSPTASPPPPDVSRPPPSSNSSPPPPTKKSTSPPPPVQSPQSAPPPPPSPSPPNSTLPSPPPSVPSSSPPPPSSSPASPSNSSSASPSNSPLSSDLPEKPTAKTTTGTNVGSPSQKGGLSPGTYAAIATVFGVLLLSLVVFSVWFVQKRKRRKGLYHIPYNVPSPFSSSQNSDSIFLKSQSPSPLIGSHSASEKYVYSSSEAGGVSNNSRAFAYEELVEATSGFSPVKLLGEGGFGCVYKGTLSDGREIAVKQLKIGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEYQRLLVYDFVQNDTLHHHLHSENSPILGWATRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDGNFEAQVADFGLAKLASDTHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVYSYGVVLLELITGRKPVDSSQPLGDESLVEWARPLLAQALEDERFEELADPKLDNNYVDSEMFRMIEAAAACVRHSAIKRPRMSQVVRALDSLDDTTDIDNGVKPGQSGVFDSAQQSAQIRMFQRMAFGSQDYSSEYIDRSRSQSSWRSRESGEQRSREFEHRSSFAPPVNRSVLWNN 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7757238 7761562 + Conep16aG0295900.1 Cone16ag0598 455032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0598 742 SMART serkin_6 381 657 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0598 742 MobiDBLite consensus disorder prediction 8 234 - -
Cone16ag0598 742 ProSiteProfiles Protein kinase domain profile. 381 657 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0598 742 MobiDBLite consensus disorder prediction 707 729 - -
Cone16ag0598 742 MobiDBLite consensus disorder prediction 1 275 - -
Cone16ag0598 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0598 742 FunFam proline-rich receptor-like protein kinase PERK8 457 669 - -
Cone16ag0598 742 SUPERFAMILY Protein kinase-like (PK-like) 362 654 IPR011009 -
Cone16ag0598 742 MobiDBLite consensus disorder prediction 703 729 - -
Cone16ag0598 742 Pfam Protein kinase domain 384 590 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0598 742 ProSitePatterns Protein kinases ATP-binding region signature. 387 409 IPR017441 GO:0005524(InterPro)
Cone16ag0598 742 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 232 690 IPR047117 -
Cone16ag0598 742 Gene3D Phosphorylase Kinase; domain 1 343 456 - -
Cone16ag0598 742 MobiDBLite consensus disorder prediction 235 275 - -
Cone16ag0598 742 FunFam Proline-rich receptor-like protein kinase PERK8 353 456 - -
Cone16ag0598 742 CDD STKc_IRAK 387 657 - -
Cone16ag0598 742 Gene3D Transferase(Phosphotransferase) domain 1 457 671 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0873 Cone-Chr13:7771553 Cone16ag0598 Cone-Chr16:7757238 2.23E-181 dispersed
Cone16ag0598 Cone-Chr16:7757238 Cone9ag0499 Cone-Chr9:2387964 8.61E-181 dispersed
Cone1ag0183 Cone-Chr1:1044234 Cone16ag0598 Cone-Chr16:7757238 2.03E-45 dispersed
Cone5ag1687 Cone-Chr5:12001927 Cone16ag0598 Cone-Chr16:7757238 1.58E-46 dispersed
Cone16ag0596 Cone-Chr16:7751145 Cone16ag0598 Cone-Chr16:7757238 2.26E-89 proximal
Cone2ag0408 Cone-Chr2:2164959 Cone16ag0598 Cone-Chr16:7757238 0 transposed
Cone13ag0906 Cone-Chr13:7982991 Cone16ag0598 Cone-Chr16:7757238 3.71E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82219 PF02453 Reticulon 6.20E-22 CL0484 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0598 - - - 0.0