Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0650 ATGGCAGCATCAAAGAAGTTCAGAGGTGTCAGGCAACGCCGCTGGGGCTCATGGGTGTCTGAGATTCGTCACCCTTTATTGAAAAAAAGGGTATGGCTAGGGACATACGAGACGGCAGAAGAAGCGGCTAGAGCATATGATGAAGCCGCCATTTTGATGAGTGGTAGAAATGCCAAGATAAACTTTCCGGTCGTTATGAATCAAATCTCAAGCAGCAGCAGTAGCAGCAACAACAACAACAATAAAGTTTTGATTTCATCTTCTTTTTCATCGTCGTCATCTCTGACAAGTAGGACTACTAGTGCACTTTCCGAAATTCTCAGCGCTAAGCTTCGGAAATGCTGCAAATCACCCTCGGCATCCCTCACTTGCTTGAGGCTCGACACTGAGAACTCAAGGATCGGAGTCTGGCAAAAGCATGCAGGCGCCACTCCAGATTCGAATTGGGTTATGATGGTAGAGTTGGAAAAGAAGATTATTAATGATGGCAAAAAGTTAATAGACATTCCGGAAGAGCCGAATCATGAAATGACTATATCGGAGATATTGCCCGAAAATATCAATCCAGGGTTAATACGATCATTATGTGGGGATCATAATGATCCTGGTTTATTAATGGATGATGAAGAGAGATTAGCATTGCAAATGATAGAAGAACTTCTTAATAGGAATTGA 675 42.81 MAASKKFRGVRQRRWGSWVSEIRHPLLKKRVWLGTYETAEEAARAYDEAAILMSGRNAKINFPVVMNQISSSSSSSNNNNNKVLISSSFSSSSSLTSRTTSALSEILSAKLRKCCKSPSASLTCLRLDTENSRIGVWQKHAGATPDSNWVMMVELEKKIINDGKKLIDIPEEPNHEMTISEILPENINPGLIRSLCGDHNDPGLLMDDEERLALQMIEELLNRN 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8006738 8007561 + Conep16aG0301100.1 Cone16ag0650 455084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0650 224 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Cone16ag0650 224 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone16ag0650 224 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone16ag0650 224 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone16ag0650 224 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone16ag0650 224 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone16ag0650 224 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 129 IPR050913 -
Cone16ag0650 224 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
Cone16ag0650 224 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone16ag0650 224 Pfam AP2 domain 6 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0650 Cone-Chr16:8006738 Cone16ag0813 Cone-Chr16:8830663 6.12E-64 dispersed
Cone16ag0650 Cone-Chr16:8006738 Cone4ag1792 Cone-Chr4:13040697 4.74E-62 wgd
Cone16ag0650 Cone-Chr16:8006738 Cone7ag0635 Cone-Chr7:3242891 3.23E-63 wgd
Cone16ag0650 Cone-Chr16:8006738 Cone7ag1701 Cone-Chr7:11339494 6.75E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44954 PF02153 PDH 4.40E-14 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0650 - - - 0.0