Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0681 ATGGAGCGGATAGAAACTAGCCAAAACCAGAACGAGCATTTGATTGATATCATCCCAGATGAAAATAGTAGATTACCAAGTAACCCACAAGATCCTATATATCATACTTCTTCAACCTCTTCAAACCGATCAAACTCTAGGAATAACCCTTCATTTATTACCAGACAGAATGATAGAAACCCGTTAAATTCCGGGCTATGGATATCTCTCGAACTTGTAACCACTGTGATTCAGATAATATCATCTGTTATCGTATTGTCCATCTCAAAAAACGAAAAGCCCGAAGCCCCTTTGTTTTTGTGGGTTATGGGCTATGCATCAGGCTGTGTAGCAACTCTCCCTGTTCTTTATTGGCGTTATCGTAAATTTTATTGGGATAATAATGACCAAGAGATCTCTCAATCACAGCAAGGATTGGTTATCGGTGATTCTCCTGAATCCACATCTTATACTGCTATCTCTGTTAGTCAATCACCGGACGAGCAGATTAGTCAAAGTACTGATCATCTATCTTTCAGTAATGCACAAGTTCGAATAAATTTATATGAGAGACTTAACATCTTAATGGACCATTTCAAGATGACCTTAGACGGATTCTTCGCTGTGTGGTTTGTCGTGGGCAATGTATGGGTATTCGGAGGTCACTCATCTCCTTCCGAAGCTCCTAATCTATACAGGCTTTCATTAGTCTTCCTTACCTTTAGCTGTATTGGATATGCCATGCCGTTCATAATGTGCGCCACAATCTGTTGCTGCATGCCTTGCATTGTTTCTATCCTCGGATTCCATGAAGATCGTTCCCACACTATTGGAGCCTCTTCTGATGCGATTAATTCTCTACCAACCTACAAATTTAAGTTGAATAAAAATGGAAATGATAATGAGACTGTTGGAGGATCATATGAAGGTGGGTCTGGTGGGGTCCTGGCTCCTGGGACAGAGAATGAGCGTGTGGTGTCTGGAGAAGATGCGGTATGTTGTATTTGCTTAGCACAATATGCAGAGAACAACGAGCTAAGAGAATTGCCGTGTTCGCACATCTTTCATGTGGAGTGTGTCGATAAATGGTTAGAAATCAATGCTTCTTGTCCCCTTTGCAAGTGTTATATATGTGATAATAGTAGCCCCTCATTATTAGCCAGAGACTCGAGCCACTCCTAG 1161 41.17 MERIETSQNQNEHLIDIIPDENSRLPSNPQDPIYHTSSTSSNRSNSRNNPSFITRQNDRNPLNSGLWISLELVTTVIQIISSVIVLSISKNEKPEAPLFLWVMGYASGCVATLPVLYWRYRKFYWDNNDQEISQSQQGLVIGDSPESTSYTAISVSQSPDEQISQSTDHLSFSNAQVRINLYERLNILMDHFKMTLDGFFAVWFVVGNVWVFGGHSSPSEAPNLYRLSLVFLTFSCIGYAMPFIMCATICCCMPCIVSILGFHEDRSHTIGASSDAINSLPTYKFKLNKNGNDNETVGGSYEGGSGGVLAPGTENERVVSGEDAVCCICLAQYAENNELRELPCSHIFHVECVDKWLEINASCPLCKCYICDNSSPSLLARDSSHS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8140932 8144241 + Conep16aG0304200.1 Cone16ag0681 455115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0681 386 CDD RING-H2_RNF6-like 326 367 - -
Cone16ag0681 386 ProSiteProfiles Zinc finger RING-type profile. 326 367 IPR001841 -
Cone16ag0681 386 SMART ring_2 326 366 IPR001841 -
Cone16ag0681 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 371 IPR013083 -
Cone16ag0681 386 MobiDBLite consensus disorder prediction 17 56 - -
Cone16ag0681 386 SUPERFAMILY RING/U-box 318 372 - -
Cone16ag0681 386 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 370 - -
Cone16ag0681 386 MobiDBLite consensus disorder prediction 23 56 - -
Cone16ag0681 386 Pfam Ring finger domain 326 367 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0681 Cone-Chr16:8140932 Cone17ag1053 Cone-Chr17:7925638 8.18E-125 dispersed
Cone14ag1233 Cone-Chr14:10004483 Cone16ag0681 Cone-Chr16:8140932 3.62E-65 transposed
Cone16ag0681 Cone-Chr16:8140932 Cone2ag0338 Cone-Chr2:1787368 3.50E-252 wgd
Cone16ag0681 Cone-Chr16:8140932 Cone4ag1828 Cone-Chr4:13199765 3.36E-120 wgd
Cone16ag0681 Cone-Chr16:8140932 Cone7ag1732 Cone-Chr7:11469243 4.04E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0681 - - - 0.0