Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0698 ATGGGCGTGGACGTGTCGAACAATCAGCCAACTTCTCGTACGAAAGATTTCTTTGCCTCTCTTACTCTCTCTCTTAGCCTTGCGGGGATTTTTCGGGGTGCGGGGTGGGAAGTGGGGCTGGATAGCACGGTGGTGGAGGAAGGGGATGAGGGGAGTAATGGTGGAGGAGGGATGACGGTGAAGATGAGTAGTGAGAACTCGGGGCACACGAGATCAAGATCGGAGGATGATTTCGACGTGGAAGGAGAGCAAGATGATGAAGAAGATGAAGATCATGGAGATGATAATAGTAAGGGTAATAAGAAGAAGAAAAGGAAGAAGTATCATAGACACACTGTTGAGCAAATCAGAGAAATGGAGGCGTTGTTTAAAGAATCGCCACATCCAGATGAAAAACAAAGGCAACAACTTAGCAAGCAATTAGGCCTTGCACTAAGGCAGGCAATACAAGAACGGCATGAAAACTCATTGTTGAAGACAGAAATGGAGAAACTCAGGGAAGAGAATAAGGCCATGAGAGAGAGCATTAACAGAGCTTGTTGCCCCAACTGTGGCACTCCCACCACCACCACCACCTCTGATACTAGTAGTACTAAAGACACCACCACCTTCACAGCCGAAGAGCAGAAGCTACGACTCGAAAATTCCCGACTAAAATCCGAGGTTGAAAAGCTGCGAACGGCTCTGCAAAAATACCCGCCAGGGTCAGTTTCTGATCCATCATGCTCAACAACAAATGATCAAGAGAAAAAAAGCAATAGCTCCTTAGATTTTTGCACTGGATTTTTTGGGCTTGACAAGTCAAGGATCATGGATATAGTTAATCAAGCTACGGAGGAGCTCAAAAAGATGGCTACTTCTGGCGAACCACTTTGGATCCGAAGCATTGAGACCAGCCGGGAAATACTAAACTATGACGAGTACATTAAAGAATTTCCCATGCAGAATAATAGTATGAAAAGTGATAGGCTAAAGAGGTCCATAGAGTTCTCGAGAGAGACCGGAGATGTTATAGTCGATTCTCCACACTTGGTTCAAAGCTTCATGGATGTGAATCAATGGAAGGAGATGTTTCCCTTCATGATATCAAAGGCAGCTACTGTGGATGTTATCTCCCATGGGGAAGGTGCCGATAAAGATGGTGCAGTACACTTGATGTTTGTAGAGTTGCAAATGCTTACCCCCATGGTGCCAACTAGGGAAGTCTACTTCATTCGATATTGCAAGCAATTGAGCCCCGAGCAATGGGCTATTGTCGATGTTTCCGTCGACAAAGTCGAAGATAACCCCGACGCGTCCTTGGTTAAATGTCGAAAACGCCCATCCGGTTGCATCATTGAGGATAAATCAAATGGCCATTGCAAGGTCACTTTGGTAGAACATCTGGAATGCCAACAACATAATATTCACACCATGTACCGTACGATCGTCAATAGTGGCTTGGCTTTTGGGGCAATGCATTGGATGGCAACCCTTCAACTCCAATGTGAACGGCTAGTTTCCTTCATGGCTACCAAAGTTCCCATGAAAGATTCAACCGGTGTTGCAACTCTAGCTGGGAGGAAAAGTATATTGAAGCTAGCACAAAGAGTGATATCAAGTTTCTCTCATGCAATTGGTGCTTCAAGCTATCATACTTGGTCCAAAGTCATGAGCAAAACCGGAGAAGATATCAGGGTTGCTTCTCGGAAGAATATAAACGATCTAAAAGAACCTCTCGGATTGATCTTGTGTGCGGTTTCTTCCGTATGGTTGCCTGTCTCTCCTCATCTCCTATTCGATTTCTTATGTGATGAATCCCATCGAAATGAGTGGGATGTCATGTTAAGCGGAGGTCCTGCACAATCGGTTGCAAACTTAGCCAAGGGACAAGTTCGGGGTAATGCTGTTTCGGTCCTCGTAAGCTGTGATTCGAGCAACATAGCTGTACTGCCTTCCGGGTTTTCGATTCTTCCTGATGGAATTGAATCAATGCCTCTAGTCATCATTACTTCTAGGAAAGAGGAGAAGAGTGTGGAAGGATCTTTGCTCACTATTGCTTTTCAAATCGTAACGGATACTTCTCCCTCGGCGAAACTAACTACGGAATCAGTTGATTATGTGAACAATGTCATATCTTGTACCTTAAGAAACATTAGGAAAAGCTTGCAGTGTCAAGATAGTTGA 2166 44.74 MGVDVSNNQPTSRTKDFFASLTLSLSLAGIFRGAGWEVGLDSTVVEEGDEGSNGGGGMTVKMSSENSGHTRSRSEDDFDVEGEQDDEEDEDHGDDNSKGNKKKKRKKYHRHTVEQIREMEALFKESPHPDEKQRQQLSKQLGLALRQAIQERHENSLLKTEMEKLREENKAMRESINRACCPNCGTPTTTTTSDTSSTKDTTTFTAEEQKLRLENSRLKSEVEKLRTALQKYPPGSVSDPSCSTTNDQEKKSNSSLDFCTGFFGLDKSRIMDIVNQATEELKKMATSGEPLWIRSIETSREILNYDEYIKEFPMQNNSMKSDRLKRSIEFSRETGDVIVDSPHLVQSFMDVNQWKEMFPFMISKAATVDVISHGEGADKDGAVHLMFVELQMLTPMVPTREVYFIRYCKQLSPEQWAIVDVSVDKVEDNPDASLVKCRKRPSGCIIEDKSNGHCKVTLVEHLECQQHNIHTMYRTIVNSGLAFGAMHWMATLQLQCERLVSFMATKVPMKDSTGVATLAGRKSILKLAQRVISSFSHAIGASSYHTWSKVMSKTGEDIRVASRKNINDLKEPLGLILCAVSSVWLPVSPHLLFDFLCDESHRNEWDVMLSGGPAQSVANLAKGQVRGNAVSVLVSCDSSNIAVLPSGFSILPDGIESMPLVIITSRKEEKSVEGSLLTIAFQIVTDTSPSAKLTTESVDYVNNVISCTLRNIRKSLQCQDS 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8232493 8241071 - Conep16aG0305900.1 Cone16ag0698 455132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0698 721 MobiDBLite consensus disorder prediction 79 93 - -
Cone16ag0698 721 Gene3D - 81 150 - -
Cone16ag0698 721 CDD START_ArGLABRA2_like 267 497 - -
Cone16ag0698 721 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 636 719 IPR042160 -
Cone16ag0698 721 ProSiteProfiles START domain profile. 263 501 IPR002913 GO:0008289(InterPro)
Cone16ag0698 721 SMART HOX_1 104 157 IPR001356 GO:0003677(InterPro)
Cone16ag0698 721 FunFam Homeobox-leucine zipper protein GLABRA 2 272 497 - -
Cone16ag0698 721 Coils Coil 148 175 - -
Cone16ag0698 721 SUPERFAMILY Homeodomain-like 93 147 IPR009057 -
Cone16ag0698 721 SUPERFAMILY Bet v1-like 265 498 - -
Cone16ag0698 721 MobiDBLite consensus disorder prediction 234 253 - -
Cone16ag0698 721 MobiDBLite consensus disorder prediction 228 253 - -
Cone16ag0698 721 ProSiteProfiles 'Homeobox' domain profile. 102 147 IPR001356 GO:0003677(InterPro)
Cone16ag0698 721 MobiDBLite consensus disorder prediction 45 111 - -
Cone16ag0698 721 Pfam Homeodomain 105 147 IPR001356 GO:0003677(InterPro)
Cone16ag0698 721 Coils Coil 208 228 - -
Cone16ag0698 721 CDD homeodomain 109 147 IPR001356 GO:0003677(InterPro)
Cone16ag0698 721 Pfam START domain 275 498 IPR002913 GO:0008289(InterPro)
Cone16ag0698 721 Gene3D - 276 498 IPR023393 -
Cone16ag0698 721 SMART START_1 272 498 IPR002913 GO:0008289(InterPro)
Cone16ag0698 721 SUPERFAMILY Bet v1-like 520 611 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0698 Cone-Chr16:8232493 Cone18ag1103 Cone-Chr18:8049457 2.91E-143 dispersed
Cone16ag0698 Cone-Chr16:8232493 Cone17ag0165 Cone-Chr17:813315 6.33e-311 wgd
Cone16ag0698 Cone-Chr16:8232493 Cone20ag1249 Cone-Chr20:8207072 1.12E-292 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44956 PF07524 Bromo_TP 1.00E-17 CL0012 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0698 K09338 - cit:102617125 965.296