Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0743 ATGTCGACCCCTGCTCCGGGGGCGTCTCCGGTGCCGTCGACCTCACCGCCGTCTACTAACGCAACATCTCCTCCACCACCTGTAACACCTGCTGCTCCATCTCCAGCCACTCCTTCGGCGCCGCCTCCAGCTACTCCATCGTCATCACCACCTCCTCCTACCACTCCCTCTCCGCCGGCGCCTACTATGGAATCTCCTCCGCCTCCGTCGTCTTCGACATCACCGTCTCCTCCGGTGGTTCGGAGTCCTCCACCGCCTCCTTCCACTCTTGCGAAGAGTCCCCCGCCGCCGAAGGCTGGATTGACCCCCTCTTCCTCCTCGTCCGGAATTTCGACGGGGCTTGTCGTCGGAATCGCAATCGGCGGCGTTCTAATCCTTCTGTTTCTGTCTCTGTTATGTTTATGCTGCAAAAAGAAGAGGAGGAGACACGATGAAGAATCTTACTATGTGCCTCCTCCTCCACCACCACCTGGTACTAAAGTTGACCCTTACCAAGGCCCGCCACAACATTGGCATCATAATGCTCCTCCTCCCCCAGATCCTGTTATAGGAATGATGCCTAAGCCATCTCCTCCGCCTGCAATTGCATCAAGGCCACCTCACTCACCCATGAACTTGTATAACAATAATACACCTCAACCTCCAGCCTATGTGAGTAGTAGTGGAGGTTCTGGTAACTATTCCGGGTCCACAAATCCTCTCCCTCCTCCTCCTCCTCCTCCACATAGCTATTCCTTTGGTTTTGCAAAGAGTACTTTTACTTATGAGGAGTTAGCCATGGCAACTGATGGATTCTCGGATGCTAATCTCTTAGGACAAGGTGGGTTTGGATATGTTCATAGAGGTGTTCTTCCGAATGGAAAGGAAGTAGCAGTGAAGCAATTGAAGGCTGGAAGTGGGCAGGGGGAACGGGAATTCCAGGCAGAAATTGAGATTATTAGCCGAGTGCATCATAAACATCTTGTTTCTTTGGTTGGATATTGCATTACTGGTTCTCAGAGATTGCTTGTTTATGAATTTGTTCCGAACAATACTATGGAGTTCCATTTACATGGAAAAGGACGGCCTGTCATGGAATGGCCCACGAGGTTGAAGATTGCTCTAGGATCCGCAAAAGGACTGGCTTACCTTCACGAAGATTGTCATCCAAAAATTATTCATCGAGACATCAAAGCAGCAAATATACTACTGGATTTCAAGTTTGAAGCAAAGGTTGCTGATTTTGGACTTGCAAAGATTACTTCTGATGTTAATACCCATGTCTCCACCAGGGTGATGGGAACTTTCGGTTATCTGGCTCCAGAATATGCTTCTAGTGGAAAACTCACTGAGAAATCAGATGTTTTCTCATTTGGGGTTATGCTTTTGGAGTTGATTACTGGACGTAGACCAGTTGATGCGACTCAAATTTACACGGATGATAGTTTGGTAGATTGGGCTCGACCAATGCTAACTCGAGCTTTGGAGGATGGAAACTTTGATATCTTGGTTGATCCAAAGCTGCAACCCAATTACAACCACAACGAAATGGCTCGAATGGTTGCATGTGCTGCTGCTTGTGTCCGTCATTCTGCCAGGCGCCGTCCACGTATGAGCCAGGTGCTTCGGGCTCTTGATGGAGATGCATCTCTGTCTGATCTTAACGAAGGAATCAGACCTGGGCACAGCTCTATGTATAGTTCCCATGGTAGCTCAGATTATGACACTAGTCAATACAATGAGGACTTGAAAAAGTTCCGGAAAACAGCACTCGAGAGCCAGGAGCACGGTCAAAGTAGTGAATACAGTGGTGGCCGAACAACCAGCGAGTATGGTTTGTACCCATCAGGTACAAGCAGTGAGGGTCAAAATACCCGAGAAATGGAGATGAAATCGTTGAAGAAAGATAGTCCAGATTTTTAG 1902 48.58 MSTPAPGASPVPSTSPPSTNATSPPPPVTPAAPSPATPSAPPPATPSSSPPPPTTPSPPAPTMESPPPPSSSTSPSPPVVRSPPPPPSTLAKSPPPPKAGLTPSSSSSGISTGLVVGIAIGGVLILLFLSLLCLCCKKKRRRHDEESYYVPPPPPPPGTKVDPYQGPPQHWHHNAPPPPDPVIGMMPKPSPPPAIASRPPHSPMNLYNNNTPQPPAYVSSSGGSGNYSGSTNPLPPPPPPPHSYSFGFAKSTFTYEELAMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFQAEIEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTMEFHLHGKGRPVMEWPTRLKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKITSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDATQIYTDDSLVDWARPMLTRALEDGNFDILVDPKLQPNYNHNEMARMVACAAACVRHSARRRPRMSQVLRALDGDASLSDLNEGIRPGHSSMYSSHGSSDYDTSQYNEDLKKFRKTALESQEHGQSSEYSGGRTTSEYGLYPSGTSSEGQNTREMEMKSLKKDSPDF 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8484471 8488048 - Conep16aG0310500.1 Cone16ag0743 455177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0743 633 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 70 582 IPR047117 -
Cone16ag0743 633 MobiDBLite consensus disorder prediction 170 199 - -
Cone16ag0743 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 385 397 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0743 633 Gene3D Phosphorylase Kinase; domain 1 242 340 - -
Cone16ag0743 633 SUPERFAMILY Protein kinase-like (PK-like) 238 538 IPR011009 -
Cone16ag0743 633 MobiDBLite consensus disorder prediction 548 570 - -
Cone16ag0743 633 FunFam Proline-rich receptor-like protein kinase PERK1 341 549 - -
Cone16ag0743 633 MobiDBLite consensus disorder prediction 1 101 - -
Cone16ag0743 633 Pfam Protein tyrosine and serine/threonine kinase 270 538 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0743 633 SMART serkin_6 265 538 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0743 633 MobiDBLite consensus disorder prediction 582 633 - -
Cone16ag0743 633 Gene3D Transferase(Phosphotransferase) domain 1 341 549 - -
Cone16ag0743 633 MobiDBLite consensus disorder prediction 1 108 - -
Cone16ag0743 633 MobiDBLite consensus disorder prediction 149 163 - -
Cone16ag0743 633 MobiDBLite consensus disorder prediction 588 619 - -
Cone16ag0743 633 ProSiteProfiles Protein kinase domain profile. 265 544 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0743 633 MobiDBLite consensus disorder prediction 202 230 - -
Cone16ag0743 633 ProSitePatterns Protein kinases ATP-binding region signature. 271 293 IPR017441 GO:0005524(InterPro)
Cone16ag0743 633 MobiDBLite consensus disorder prediction 554 570 - -
Cone16ag0743 633 FunFam proline-rich receptor-like protein kinase PERK1 243 340 - -
Cone16ag0743 633 MobiDBLite consensus disorder prediction 143 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0743 Cone-Chr16:8484471 Cone6ag1615 Cone-Chr6:12479507 9.54E-181 dispersed
Cone16ag0743 Cone-Chr16:8484471 Cone17ag0111 Cone-Chr17:581592 3.72E-93 wgd
Cone16ag0743 Cone-Chr16:8484471 Cone2ag0294 Cone-Chr2:1523880 1.60E-290 wgd
Cone16ag0743 Cone-Chr16:8484471 Cone20ag1297 Cone-Chr20:8447839 1.22E-93 wgd
Cone16ag0743 Cone-Chr16:8484471 Cone4ag0787 Cone-Chr4:4700713 7.34E-92 wgd
Cone16ag0743 Cone-Chr16:8484471 Cone4ag0731 Cone-Chr4:4028971 4.47E-218 wgd
Cone16ag0743 Cone-Chr16:8484471 Cone7ag0733 Cone-Chr7:4436877 9.59E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82225 PF00551 Formyl_trans_N 1.50E-32 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0743 - - - 0.0