Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0754 ATGAAGAAGAAGACGAACTTTTCTCTCACGCCTCTCTCTATCCTCCTCCTCATATCTCTCTTTCTATCCACATTTCTCTCTCTCTCTAGCTCAGAAAAGCTCACAATCCGCCATGGAAGCAGCCTCACTGAAGCTGAAGCTCATTACATAAAGCAGCGGCAGCTTCTCTACTACAGGGATGAGTTCGGTGACCGAGGTGAAAAAATAACGATCGACCCATCTTTTGTTTTTGAAAATCAACGGCTGAGAAATGCTTACATAGCATTACAGGCCTGGAAGCAGGCTATCCTCTCTGACCCATATAATCTCACTCAAAATTGGGCCGGCCCAAATGTCTGTAGCTATGAAGGTGTTTTCTGTGCTCCGGCGCTGGATAACCGCACCATCCGTACCGTCGCTGGAATTGACCTCAACCACGGCGACATTGCAGGCTACTTGCCGGAGGAGCTAGGTCTTCTGCAAGATCTTGCATTGTTTCACATCAACTCGAACAGATTCTGCGGAACTGTTCCTCATAAGTTTAAGAAGTTGAAACTGCTCTTCGAATTGGATCTTAGTAACAACCGCTTCGCCGGAAAGTTTCCGGCGGTTGTGCTTCGGCTTCCGGCGTTGAAGTTTCTAGATCTGAGGTTTAATGAATTCGAAGGCACGGTGCCTAAGGAACTGTTCGATAAGGACTTGGACGCGATCTTTATCAATCACAATCGGTTCCGGTTCGAGCTACCGGAAAATTTTGGTAACTCGCCGGTGTCGGTTATCGTCCTTGCAAACAATAAGTTTCACGGCTGTGTTCCGGCGAGCTTGGGCAACATGACGGGGCTGAATGAGATTATTATGATGAACAATGGATTCCGATCCTGTTTGCCGCCTGAGATAGGGTTTTTGAAGAACTTGACCGTATTTGACGTGAGCTATAACGAGCTTCTCGGACCTTTACCGGAGACGATAGGCGGAATGGTTAGCATAGAGCAGTTGAATGTGGCGCATAATCTTCTCTCCGGAAGCATTCCGGAGAGTATTTGTGAACTGCCGAACCTTCAGAACTTTACGTTCTCTTATAATTTCTTCACCGGCGAGCCACCGTCGTGCTTGAGGGTGGCGGATTTCGATGACCGGAGAAATTGTTTGCCTGCGAGGCCGGTTCAGCGGTCGGAGACGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGATTGTAGTTCGTTTAGCTGTAAAAGGTTTGTTCCGTCTTTGCCGCCACCGCCTCCACCCTCACCTCCGATGGCGCTTTCGCCACCGCCGCCAGTTGTGTTTCAATCGCCGCCGCCTCCTCCACCGAAGTCTTCTAGTTCACCGGTTTACAGAAGACGTCCACCTCCACCACCTTCACCCTCTCCTCCGCCTCCAGTATACTCTCCACCGCCACCGCCACCGCCTTCTCCTCCACCTCCAGTTTACTCTCCACCACCGCCGCCCCCTTCCCCACCTCCACCTCCACCTCCACCATCCCCACCACCACCTATCTCTTCACCGCCGCCACCTCCACCTCCGCCATCACCTCCGCCCCCAGTTTACTCACCACCACCACCACCGCCCCCATCCCCTCCACCACCAGTTTATTTACCACCACCTCCTCCGTCCCCACCTCCACCCTCTCCATCTCCACCTCCACCCGTATATTGTGTTCGGCCATCTCCACCACCTCCGCCACCAAACTCACCACCTCCTCCACCAAATTCACCACCACCACCTCCCCCAATATTCTCTCCACCTCCACCCTTCTACTATTACAGCTCACCACCACCTCCACCACCCCATCACTCACCTCCTCCGCCACCCCACTCACCTCCTCCCCCACCTCACTCACCACCTCCACCTCCTCACTCCCCTCCACCACCAATTTATCCCTACCTATCCCCACCACCTCCACCGCCATCACCTCCACCACCTTCACCATCACCTCCGCCACCGCCTGTCTACTCTCCCCCTCCACCACCACCTTGTATAGAACCACCTCCACCTCCTCCACCATGCATAGAATATTCCGAACCACCACCACCACCTCCATTGCCCACTCCATACTTGCCTCCATCATCACCATCTCCTCCTCCTCCTTACGTTTATGTAAGCCCTCCTCCACCTCCTACACCTGCTTATGAGGGACCATTGCCGCCAATTCAAGGAGTCTCATACGCGTCTCCTCCCCCACCACCTTTCTATTGA 2199 53.16 MKKKTNFSLTPLSILLLISLFLSTFLSLSSSEKLTIRHGSSLTEAEAHYIKQRQLLYYRDEFGDRGEKITIDPSFVFENQRLRNAYIALQAWKQAILSDPYNLTQNWAGPNVCSYEGVFCAPALDNRTIRTVAGIDLNHGDIAGYLPEELGLLQDLALFHINSNRFCGTVPHKFKKLKLLFELDLSNNRFAGKFPAVVLRLPALKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFELPENFGNSPVSVIVLANNKFHGCVPASLGNMTGLNEIIMMNNGFRSCLPPEIGFLKNLTVFDVSYNELLGPLPETIGGMVSIEQLNVAHNLLSGSIPESICELPNLQNFTFSYNFFTGEPPSCLRVADFDDRRNCLPARPVQRSETQCKSFLSKPVDCSSFSCKRFVPSLPPPPPPSPPMALSPPPPVVFQSPPPPPPKSSSSPVYRRRPPPPPSPSPPPPVYSPPPPPPPSPPPPVYSPPPPPPSPPPPPPPPSPPPPISSPPPPPPPPSPPPPVYSPPPPPPPSPPPPVYLPPPPPSPPPPSPSPPPPVYCVRPSPPPPPPNSPPPPPNSPPPPPPIFSPPPPFYYYSSPPPPPPHHSPPPPPHSPPPPPHSPPPPPHSPPPPIYPYLSPPPPPPSPPPPSPSPPPPPVYSPPPPPPCIEPPPPPPPCIEYSEPPPPPPLPTPYLPPSSPSPPPPYVYVSPPPPPTPAYEGPLPPIQGVSYASPPPPPFY 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8541821 8544893 + Conep16aG0311600.1 Cone16ag0754 455188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0754 732 MobiDBLite consensus disorder prediction 634 653 - -
Cone16ag0754 732 Pfam Leucine rich repeat 157 213 IPR001611 GO:0005515(InterPro)
Cone16ag0754 732 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 20 595 IPR051582 -
Cone16ag0754 732 SUPERFAMILY L domain-like 86 363 - -
Cone16ag0754 732 PRINTS Proline rich extensin signature 464 485 - -
Cone16ag0754 732 PRINTS Proline rich extensin signature 406 418 - -
Cone16ag0754 732 PRINTS Proline rich extensin signature 449 461 - -
Cone16ag0754 732 PRINTS Proline rich extensin signature 421 437 - -
Cone16ag0754 732 MobiDBLite consensus disorder prediction 668 732 - -
Cone16ag0754 732 Gene3D Ribonuclease Inhibitor 86 246 IPR032675 -
Cone16ag0754 732 MobiDBLite consensus disorder prediction 594 624 - -
Cone16ag0754 732 FunFam Leucine-rich repeat extensin-like protein 5 248 387 - -
Cone16ag0754 732 MobiDBLite consensus disorder prediction 411 578 - -
Cone16ag0754 732 FunFam Leucine-rich repeat extensin-like protein 1 86 247 - -
Cone16ag0754 732 Pfam Leucine Rich Repeat 297 319 IPR001611 GO:0005515(InterPro)
Cone16ag0754 732 Pfam Leucine Rich Repeat 321 343 IPR001611 GO:0005515(InterPro)
Cone16ag0754 732 Gene3D Ribonuclease Inhibitor 247 388 IPR032675 -
Cone16ag0754 732 Pfam Leucine rich repeat N-terminal domain 88 120 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0754 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0754 Cone-Chr16:8541821 Cone17ag1306 Cone-Chr17:9298742 3.56E-38 dispersed
Cone16ag0754 Cone-Chr16:8541821 Cone2ag0284 Cone-Chr2:1476204 2.43E-132 wgd
Cone16ag0754 Cone-Chr16:8541821 Cone4ag0716 Cone-Chr4:3857442 1.33E-88 wgd
Cone16ag0754 Cone-Chr16:8541821 Cone4ag1835 Cone-Chr4:13239822 4.47E-57 wgd
Cone16ag0754 Cone-Chr16:8541821 Cone7ag0673 Cone-Chr7:3656919 8.79E-89 wgd
Cone16ag0754 Cone-Chr16:8541821 Cone7ag1740 Cone-Chr7:11517867 2.49E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g367 . . . . Bpe01g00521 . Bma07g00478 . Cmo10g00642 . Cma05g01334 . Car05g01248 Car12g01214 Sed11g0071 . Cpe18g00446 Bhi02g01114 Tan09g1311 Cmetu02g0637 . Hepe09g0745 . . Cla11g00230 . Cec11g0262 Cco11g0272 Clacu11g0393 Cmu11g0242 Cre11g0739 Cone2ag0284 Cone16ag0754 Cone4ag0716 Cone7ag0673 Lsi06g00890 Csa02g00136 Chy05g01360 Cme02g01330 . . . Bda09g01162 Bpe08g00463 . . . . . Cmo12g01271 Cma10g00602 . Car10g00558 . Cpe11g01106 Cpe07g00999 Bhi06g02041 Tan08g0179 Cmetu05g0289 . . . . Cla06g01020 Cam06g1139 Cec06g1179 Cco06g1179 Clacu06g1101 Cmu06g1076 Cre06g1872 Lsi11g00270 Csa01g02065 . Cme05g01968
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0716 . 68 412 Leucine-rich Repeat extension Gene Families AT1G62440 64.0 1.8e-51 201.8
Cone4ag1835 . 48 389 Leucine-rich Repeat extension Gene Families AT1G62440 56.1 2.3e-46 184.9
Cone7ag0673 . 68 412 Leucine-rich Repeat extension Gene Families AT1G62440 62.0 3.9e-46 184.1
Cone17ag1306 . 55 392 Leucine-rich Repeat extension Gene Families AT1G62440 61.8 5.6e-45 180.3
Cone5ag1503 . 66 245 Leucine-rich Repeat extension Gene Families AT1G62440 66.7 8.4e-41 166.4
Cone4ag0264 . 39 364 Leucine-rich Repeat extension Gene Families AT1G62440 56.4 2.4e-40 164.9
Cone4ag1548 . 58 226 Leucine-rich Repeat extension Gene Families AT1G62440 69.2 1.2e-39 162.5
Cone2ag0284 . 66 236 Leucine-rich Repeat extension Gene Families AT1G62440 66.1 1.3e-38 159.1
Cone16ag0754 . 67 237 Leucine-rich Repeat extension Gene Families AT1G62440 66.7 1.3e-38 159.1
Cone7ag1740 . 3 212 Leucine-rich Repeat extension Gene Families AT1G62440 57.1 2.3e-38 158.3
Cone12ag1471 . 58 382 Leucine-rich Repeat extension Gene Families AT1G62440 52.3 3.0e-38 157.9
Cone4ag0716 . 1 413 Leucine-rich Repeat extension Gene Families AT4G13340 71.6 1.9e-74 278.1
Cone7ag0673 . 35 413 Leucine-rich Repeat extension Gene Families AT4G13340 76.4 4.0e-72 270.4
Cone16ag0754 . 39 411 Leucine-rich Repeat extension Gene Families AT4G13340 75.1 3.1e-64 244.2
Cone2ag0284 . 38 410 Leucine-rich Repeat extension Gene Families AT4G13340 73.8 1.5e-63 241.9
Cone4ag1835 . 34 386 Leucine-rich Repeat extension Gene Families AT4G13340 65.0 1.1e-56 219.2
Cone5ag1503 . 21 266 Leucine-rich Repeat extension Gene Families AT4G13340 57.7 9.2e-45 179.5
Cone7ag1740 . 1 183 Leucine-rich Repeat extension Gene Families AT4G13340 77.0 2.3e-43 174.9
Cone17ag1306 . 18 212 Leucine-rich Repeat extension Gene Families AT4G13340 62.6 2.1e-41 168.3
Cone20ag0166 . 18 224 Leucine-rich Repeat extension Gene Families AT4G13340 65.9 2.4e-40 164.9
Cone4ag0264 . 39 367 Leucine-rich Repeat extension Gene Families AT4G13340 56.1 3.1e-40 164.5
Cone12ag1471 . 55 382 Leucine-rich Repeat extension Gene Families AT4G13340 55.9 3.8e-38 157.5
Cone4ag1548 . 13 225 Leucine-rich Repeat extension Gene Families AT4G13340 56.8 1.4e-37 155.6
Cone4ag0716 . 35 417 Leucine-rich Repeat extension Gene Families AT3G24480 77.7 8.3e-87 318.5
Cone7ag0673 . 35 413 Leucine-rich Repeat extension Gene Families AT3G24480 75.7 5.8e-80 295.8
Cone16ag0754 . 31 407 Leucine-rich Repeat extension Gene Families AT3G24480 72.5 1.1e-70 265.0
Cone2ag0284 . 30 406 Leucine-rich Repeat extension Gene Families AT3G24480 71.2 2.3e-68 257.3
Cone4ag1835 . 34 386 Leucine-rich Repeat extension Gene Families AT3G24480 62.1 3.3e-59 226.9
Cone5ag1503 . 18 266 Leucine-rich Repeat extension Gene Families AT3G24480 59.2 1.5e-48 191.4
Cone4ag0264 . 25 367 Leucine-rich Repeat extension Gene Families AT3G24480 56.4 1.9e-46 184.5
Cone17ag1306 . 17 212 Leucine-rich Repeat extension Gene Families AT3G24480 64.5 4.2e-46 183.3
Cone7ag1740 . 1 183 Leucine-rich Repeat extension Gene Families AT3G24480 70.5 5.6e-43 172.9
Cone4ag1548 . 17 225 Leucine-rich Repeat extension Gene Families AT3G24480 60.3 6.9e-41 166.0
Cone20ag0166 . 17 404 Leucine-rich Repeat extension Gene Families AT3G24480 58.1 1.2e-40 165.2
Cone12ag1471 . 58 382 Leucine-rich Repeat extension Gene Families AT3G24480 53.4 2.9e-39 160.6
Cone4ag0264 . 6 364 Leucine-rich Repeat extension Gene Families AT3G22800 61.4 5.7e-61 232.6
Cone4ag1835 . 60 386 Leucine-rich Repeat extension Gene Families AT3G22800 66.2 2.2e-52 204.1
Cone12ag1471 . 57 382 Leucine-rich Repeat extension Gene Families AT3G22800 61.5 2.0e-50 197.6
Cone4ag0716 . 80 412 Leucine-rich Repeat extension Gene Families AT3G22800 62.4 9.1e-43 172.2
Cone7ag0673 . 80 412 Leucine-rich Repeat extension Gene Families AT3G22800 64.5 1.3e-41 168.3
Cone7ag1740 . 1 282 Leucine-rich Repeat extension Gene Families AT3G22800 71.0 5.0e-41 166.4
Cone2ag0284 . 78 402 Leucine-rich Repeat extension Gene Families AT3G22800 63.3 2.1e-39 161.0
Cone16ag0754 . 79 403 Leucine-rich Repeat extension Gene Families AT3G22800 63.9 2.1e-39 161.0
Cone4ag1835 . 32 386 Leucine-rich Repeat extension Gene Families AT5G25550 62.0 2.1e-54 210.7
Cone4ag0264 . 33 364 Leucine-rich Repeat extension Gene Families AT5G25550 61.4 2.0e-44 177.6
Cone2ag0284 . 52 402 Leucine-rich Repeat extension Gene Families AT5G25550 62.8 2.5e-39 160.6
Cone7ag0673 . 54 405 Leucine-rich Repeat extension Gene Families AT5G25550 60.3 4.3e-39 159.8
Cone4ag0716 . 54 405 Leucine-rich Repeat extension Gene Families AT5G25550 57.8 9.6e-39 158.7
Cone16ag0754 . 53 403 Leucine-rich Repeat extension Gene Families AT5G25550 62.5 8.2e-38 155.6
Cone12ag1471 . 58 382 Leucine-rich Repeat extension Gene Families AT5G25550 55.1 6.9e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002074 1 2 0 2 2 2 4 2 2 2 2 2 2 2 2 3 2 4 4 2 2 2 2 2 2 2 2 3 2 1 64