Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0813 ATGGTCAAAGCAAAGAAGTTCCGAGGAGTCAGACAGCGCCATTGGGGCTCATGGGTAGCCGAAATTCGCCACCCGTTATTAAAAAGAAGGGTTTGGTTAGGGACATTTGAGACGGCAGAAGAAGCAGCTAGAGCATATGATCAAGCTGCCATTTTAATGAGCGGTCGGAATGCGAAAACCAATTTCCCAGCCATAACTCAAATCCCATCTTCATCAGCAGATCAAGCTCAAACAAGTCATAATGAGGAACTAATATTACATTCATCATCATCATCAACAATGTTATCATCATTCCCAAAGGGAAAATGTACTAGTAATGATAATTTATCAGAAATATTACATGCAAAGCTAAGGAAATGTAGCAAACTCCCATCCCCATCAATGACTTGCTTAAGGCTCAACACGGAGAACTCTCATATCGGAGTTTGGCAAACGAGAGCAGGTCAAAGTACTTTGGATTCCAAATGGATCTTGAGCGTTCCGTTCGGAAAAAATGATATGAATAATAATGATAATGAGGTCGGTGATTCTCGAAATAATTTATCTTCTTCACCAATTGATTCTAATGAATCCAATCCGGTGTCTTTAATGGAAGCTCCTCATCTTCAACTTACTACCATGGATGAGGAGGAGAGAATTGCATTGCAAATGATAGAGGAGCTGCTTAATAGGAATTATCCAAGCCCTTCTCACGGCACTGATCAAGAAGGGGAACAAAACACTTATAGAGAGGAGTAA 738 40.51 MVKAKKFRGVRQRHWGSWVAEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPAITQIPSSSADQAQTSHNEELILHSSSSSTMLSSFPKGKCTSNDNLSEILHAKLRKCSKLPSPSMTCLRLNTENSHIGVWQTRAGQSTLDSKWILSVPFGKNDMNNNDNEVGDSRNNLSSSPIDSNESNPVSLMEAPHLQLTTMDEEERIALQMIEELLNRNYPSPSHGTDQEGEQNTYREE 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8830663 8831951 - Conep16aG0317600.1 Cone16ag0813 455247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0813 245 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone16ag0813 245 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone16ag0813 245 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone16ag0813 245 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone16ag0813 245 CDD AP2 5 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone16ag0813 245 MobiDBLite consensus disorder prediction 224 245 - -
Cone16ag0813 245 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
Cone16ag0813 245 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 154 IPR050913 -
Cone16ag0813 245 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone16ag0813 245 Pfam AP2 domain 6 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone16ag0813 245 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Cone16ag0813 245 MobiDBLite consensus disorder prediction 163 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0650 Cone-Chr16:8006738 Cone16ag0813 Cone-Chr16:8830663 6.12E-64 dispersed
Cone16ag0813 Cone-Chr16:8830663 Cone4ag1792 Cone-Chr4:13040697 5.86E-58 dispersed
Cone16ag0813 Cone-Chr16:8830663 Cone4ag1786 Cone-Chr4:13012589 5.86E-58 wgd
Cone16ag0813 Cone-Chr16:8830663 Cone7ag0635 Cone-Chr7:3242891 4.28E-74 wgd
Cone16ag0813 Cone-Chr16:8830663 Cone7ag1701 Cone-Chr7:11339494 1.05E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44970 PF00415 RCC1 5.70E-11 CL0186 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0813 - - - 0.0